Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1720 ATGAAGCAGACTTTTGATCATTCATCTTTGGATCCTTCCAAGATTCCATCTATAAATATACCCAGAGGAACAGGGCGCAATCCATTGGAGGTTTTATCTGGATCTGATTCCTACCATGCCTCATCTGATGCTAGCCTCTTTTCCAGCTCATTACCTGTTCTCCCACATGAAAAATTGAACGTAAATGATACTGAAAATGGTTATCAATCTGTTGATGACATCTCATCTGGCTTTAACAAGCTCCATCAAGATGTAACGGGCAAGGATTCACTAGAAGATGTTGGCACTCATGCAATTGGAACCATGCTTCCTGATGACGAGGAGGAGCTTTTAGCTGGCATAATGGATGATTTTGATCTAAGTGGTTTACCTGGTTCTCTTGAGGACTTGGAAGATTATGATCTTTTTGGTAGTGGTGGCGGCATGGAACTTGAAACTGATCAACAGGAAAGTCTTAGTGTGGGCATGTCTAAGTTAAACTTCTCTGATAGTGCTGTTGGCAATGGTTTGCCCCATTATTCTTTTCCTAATGGTGTCGGAACTGTTGCGGGAGAACATCCATATGGAGAGCATCCTTCTCGAACATTATTTGTTCGAAATATAAACAGTAATGTAGAGGATTCGGAGCTGAAAGCTCTTTTTGAGCAATATGGTGATATTAGAACCCTCTATACTGCATGTAAACATCGGGGGTTTGTAATGATATCCTATTATGATATCCGTTCTGCTCGAACAGCTATGCGTGCATTACAAAACAAACCTCTGCGGCGCAGGAAACTTGACATTCATTTCTCGATACCGAAGGATAATCCATCAGACAAGGATATCAACCAAGGTACCTTGGTAGTTTTCAATTTGGACCCATCTGTTTCAAATGAAGACCTCCGTCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAGTTTATTGAATTTTACGATGTCAGAGCTGCAGAGGCAGCACTTAAATCGTTAAATAGAAGTGACATAGCAGGCAAACGCATAAAGCTGGAACCTAGCCGACCTGGAGGAGCTCGTCGAAATTTGATGCTTCAACTAAATCAAGAGCTTGATCAAGATGAGTCTCGGAGTTTCCGATATCAAGTGGGTTCACCTGTGGCCAACTCTCCTCCTGGTAATTGGCTGCAGTTCAATAGCCCTGTCGAGCAGAATTCAATACAATCTATCAGTCATTCTCCTGGTTCTAGGATCATAAGCCCCACAACTGGAAACCACTTGCCAGGATTAGCTTCAATTTTGCAACCTCAGGTATCAAACACTGTGAAGGGTGCAACCATTGGCAAGGACATAGGAAGGAGCAGCCATGGAGAGAACATATTTACCAGCATGAATTCATCACATGGAGCTTCTTTCCAGTCGCATTCACTTCCAGAGCCAAAATTCAGCCAATATCGTGGAGCGTTGTCCTCCTTGGGTCCATCAACATCCAATGGATCGTCAATGGAAACCTTGTCTGGGCCACAGTTTTTATGGGGAAGTCCAAGCCTCTACTCAGAGCATACCAAACCTTCAGCCTGGCCGAGACCATCTGCTGTGCATCCATTTCCATTGAGTGGAAAAGGCTTCCCATACTCGAATCAGAATAGTAACTATGTTGGTGCATCCCAGAATCACCACAATCATCATGTTGGGTCTGCTCCATCAGGTTTGCCACTAGAGAGGAACTTTGGTTTCCTTCCTGAATCACCTGAAACTTCATTTATGAGTAATGTTGGTTATGGGGGCATGAGTCTGGGGCACAATGATGGAAGTTACATGGTTAATGCGGGCGGATCTGTTAATGCTGGCATTACTATTCCGAGAAATATGTCTGATAATGGTTCATCAAGCCTCAGAATTAGATCTTCTCCTAGGCTTAGCCCTGTGTTTGTGGGTAATGGTCCTTACGCAGGACTGCTGCCTACCACCATTGAGAGTTTGACTGACCGTTCTCGGAGTAGGTGGATAGAGAACAATGGGAGCCAAGTTGAGAGCAAGAAGCAATTTAACCTTGACTTGGATAAGATTAAAAGTGGGGAAGATTCAAGGACTACATTAATGATCAAGAATATCCCAAACAAATACACCTCAAAAATGTTATTAACTGCCATTGATGAAAATCACAGGGGCACATATGATTTTCTCTATCTGCCAATCGACTTTAAGAATAAATGCAATGTGGGATATGCATTTATCAACATGCTGTCACCCTCCCTTATTATTCCATTCTACGAGACATTCAACGGGAAGAAATGGGAGAAGTTTAATAGTGAAAAAGTTGCTTCTTTGGCTTATGCTCGAATCCAAGGGAAGGCTGCCCTTGTCAGTCACTTCCAAAATTCAAGTTTGATGAATGAAGACAAGCGCTGCCGCCCCATTCTCTTCCACTCAGAGGGTCCTGAAGCCGGTGATCAGATCGTGCAAGAGCATCTTTCCTCCAACAATTTGAACATTCAGGCATCAAAGCCAAGTGAACATTCGAGTGATTCTCCTGGAAGCCCTCCTAAGGATGGCCCTCCTGTGAGCTTGGGGACAAATTAA 2571 0.4337 MKQTFDHSSLDPSKIPSINIPRGTGRNPLEVLSGSDSYHASSDASLFSSSLPVLPHEKLNVNDTENGYQSVDDISSGFNKLHQDVTGKDSLEDVGTHAIGTMLPDDEEELLAGIMDDFDLSGLPGSLEDLEDYDLFGSGGGMELETDQQESLSVGMSKLNFSDSAVGNGLPHYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQYGDIRTLYTACKHRGFVMISYYDIRSARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDESRSFRYQVGSPVANSPPGNWLQFNSPVEQNSIQSISHSPGSRIISPTTGNHLPGLASILQPQVSNTVKGATIGKDIGRSSHGENIFTSMNSSHGASFQSHSLPEPKFSQYRGALSSLGPSTSNGSSMETLSGPQFLWGSPSLYSEHTKPSAWPRPSAVHPFPLSGKGFPYSNQNSNYVGASQNHHNHHVGSAPSGLPLERNFGFLPESPETSFMSNVGYGGMSLGHNDGSYMVNAGGSVNAGITIPRNMSDNGSSSLRIRSSPRLSPVFVGNGPYAGLLPTTIESLTDRSRSRWIENNGSQVESKKQFNLDLDKIKSGEDSRTTLMIKNIPNKYTSKMLLTAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKAALVSHFQNSSLMNEDKRCRPILFHSEGPEAGDQIVQEHLSSNNLNIQASKPSEHSSDSPGSPPKDGPPVSLGTN* 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1720 856 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 346 IPR000504 GO:0003723
Dod03g1720 856 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 260 IPR000504 GO:0003723
Dod03g1720 856 SMART rrm1_1 280 348 IPR000504 GO:0003723
Dod03g1720 856 SMART rrm1_1 195 263 IPR000504 GO:0003723
Dod03g1720 856 SMART rrm1_1 695 771 IPR000504 GO:0003723
Dod03g1720 856 PANTHER PROTEIN MEI2-LIKE 2 2 847 - -
Dod03g1720 856 MobiDBLite consensus disorder prediction 1 15 - -
Dod03g1720 856 SUPERFAMILY RNA-binding domain, RBD 191 354 IPR035979 GO:0003676
Dod03g1720 856 MobiDBLite consensus disorder prediction 818 841 - -
Dod03g1720 856 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 847 - -
Dod03g1720 856 CDD RRM2_MEI2_like 278 348 - -
Dod03g1720 856 Gene3D - 278 377 IPR012677 -
Dod03g1720 856 CDD RRM3_MEI2_like 696 781 IPR034454 -
Dod03g1720 856 SUPERFAMILY RNA-binding domain, RBD 695 780 IPR035979 GO:0003676
Dod03g1720 856 MobiDBLite consensus disorder prediction 818 856 - -
Dod03g1720 856 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 267 IPR000504 GO:0003723
Dod03g1720 856 MobiDBLite consensus disorder prediction 1 27 - -
Dod03g1720 856 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 352 IPR000504 GO:0003723
Dod03g1720 856 Pfam RNA recognition motif 2 693 789 IPR007201 -
Dod03g1720 856 CDD RRM1_MEI2_like 193 269 IPR034453 -
Dod03g1720 856 Gene3D - 183 277 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1720 Dod-Chr3 24897329 24903566 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1720 189 387 Eukaryotic Initiation Factors Gene Family AT1G71770 25.561 9.38e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1720 - - gmx:100787152 1467.98