Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1718 ATGAAGGACACAAGCTTCTCAACATCAGCTGCAAGCAGCACCAACACCAAAACCAAAATCAACATCAACAAGAGCAAGGCACTTGCTCAGTACAGTGCAGATGCTGGGATTCTGGCTGAGTTTGAGGAATCTGGTATGTCTGGCAAATCATTTGACTACTCAAAATCGATTGTTGACCCTCCCAGGTCAGTGTCTGAAGATAAAATGATTGCATACTTGTCCAAAATCCAAAGGGGTGGTCTCATCCAACCCTTTGGTTGCATGATTGCAATTGAGGAACCCTCTTTCAGAATCATTGGGTTCAGTGAGAATTGCTTTCAGTTGTTGGGTTTGGAGGGGAAGCAATTTGACTCAAAACAGTTCAGTGGGGGTCTGATTGGTGTTGATGCCACAACACTGTTCACTCCTCCTTCTGGGGCTTCCCTAGCAAAAGCTGTGGCCTCAAGGGAAATTTCACTCTTGAACCCTGTTTGGGTCTATGCAAGGGAAACCCAGAAGCCGTTTTATGCCATACTGCATAGGATTGATGTTGGGGTTGTGATTGATTTGGAGCCTGCAAGGTCCAGTGATCCTGCATTGTCCTTTGCTGGGGCAGTACAGTCACAGAAGCTAGCTGTTAGAGCAATTTCAAGGCTGCAGTCTCTTCCTGGGGAAGATATTGGTCTGTTGTGTGACACTGTTGTTGAGGAAGTGCAGAAGCTCACTGGATATGACAGGGTTATGGTTTATAAGTTTCATGAAGATGATCATGGTGAGGTTGTTTCTGAGATTAGGAGGTCAGATTTAGAGCCTTACTTGGGTTTGCATTATCCTGCCACGGATATCCCTCAAGCCGCTCGCTTCTTGTTCAGGCAAAACCGGGTCAGGATGATCTGTGATTGCCATGCAAAGCCTGTTAAGGTCTTTCAGAGTGAAGAGTTAAGGCAACCTCTCTGCTTGGTCAACTCAACCCTTAGGTCACCACATGGTTGTCATACACAGTATATGGCTAACATGGGCTCAATTGCCTCTCTGGTCATGGCAATTATAGTCAATGGAAAGGATACGACAAGGCTGTGGGGTTTGCTAGTTTGTCATCACACTACACCACGCTATGTGCCTTTCCCTGTTCGCTATGCTTGTGAGTTCCTGATGCAGGCTTTTGGAGTGCAGCTTTATATGGAGATTCAATCGGCAACACAAATGGAAGAGCAAAGAATTCTGAAAACACAAACCTTGTTGTGTGACATGCTCCTACGTGATGCCCCATTTGGCATTGTGACTCAGTCTCCTAGTATCATGGATCTTGTGAAGTGTGATGGGGCTGCCTTATATTATGAAGGAAGCTGTTGGGTGTTAGGCACAACCCCCACTGAATCACAGGTAAAAGACATTACTGAATGGCTTCTTAGTAATCATGGGGACTCAACAGGTTTGAGCACGGATAGTTTGGCTGATGCCGGTTATCCAGATGCTGCTTTACTAGGGGATGCAGTTTGTGGCATGGCCACAGCAAGAATCAGTTCAAGGCATTTCTTGTTCTGGTTTAGATCTCACACTGCTAAGGAAGTCAAATGGGGAGGAGCCAAGCACCATCCAGAGGAAAAGGATGATGGAGGAAAAATGAATCCAAGGTCATCATTTAAAGCTTTTCTTGAAGTAGTCAAAAGAAAAAGTTTGCCTTGGGAAGTTTCTGAAATCAATGCTATTCACTCATTACAACTTATAATGAGAGATTCATTCCAAGACTCGGATAACAGCGGTCAAAAGACTCTAAATCACATACAGAAAAGAGAAACTGCTGTTGGTGTGACTGGGATGGACGAACTCAGCTCGGTAGCAATTGAAATGGTGAGATTAATTGAGACAGCAACAGTCCCAATTTTTGGGGTTGACTCAGGTGGCCTAATCAATGGATGGAATGCAAAAATGGCTGAATTGACAGGTTTGCAGGCCAGTGAAGCTATGGGAAAATCTCTAGTAAATGAAGTGGTACATGTGGACTCACGTGAAAATCTTGAAAATATTCAAAGTAGAGCCTTGCAAGGCCAGGATGACAAAAATGTCGAGTTGAGATTGAAAAACTTTGGGCTTCATCAACAAAATGAAGTTGTATATCTCAAAGTCAGTACCTGTACAAGTAGGGACTACACAAATGCTGTTGTTGGGGTATGCTTTGTTGGTCAAGATATCACTTATGAGAAAGTTGTTCTAGACAAATTCGTCAAGTTGGAAGGTGATTACAAAGCTATCATACAAAGTCTCAATCCACTGATTCCACCCATCTTTGCTTCTGATGAGAACGCCTGCTGCTCTGAATGGAATGCAGCCATGGAAAGACTAACTGGTTGGAAGAGAGATGAAGTCATAGGAAAAATGCTTCCTGGGGAAATTTTTGGAAGCTTTTGCAGATTGAAAGGTCAAGATACACTGACTAATTTTATGATTTTACTACATCGTGGAATAAGTGGTCAAGATTTTGAGAAGTTCCCCTTTGGATTTTTTGATAGAAATGGAGAATTTATAGAGGCTTACGTAACAGCAAACAAAAGGATCGATGCAGGTGGGAATATGATTGGCTGTTTCTGCTTCTTGCAGATTGTATCATCTGACCTGAATCAGCCTTCTGAAGGACGAAGGCCTCAAGATAGGAAAAGCATTTCTGAATCCAAGGAGTTGGCTTATATACTACAAGAGATGAAGAATCCTTTGAATGGCATTCGATTTACGCACAAACTTTTAGAAAACACAGTGGTCTCAGAAAATCAAAAACAATTTCTTGACACTAGTGATGCGTGTGAAAGACAGATAATGGCAATTATTGAGGACACAGATTTAGGAAGTATCAATGAAGGCACTATGCAGCTAAACATGGAAGAATTTCTTCTGGGAAATATGTTAGATGCCATTGTCAGTCAGGTCATGATCTTGGTAAGAGGGAAAAACTTGCAGTTGTTTCATGAAATTCCTGATGAAATCAAGACACTTTCTCTGTATGGTGACCAAATTAAGCTTCAGGTGGTCTTGTCTGACTTTCTCCTAAATGTAGTAAGCCATACACCATCTCCAAACGGCTGGGTTGAAATCAAGATTTCACCTGGTTTAAAGATAATACAGGATGGTGATGAGTTTATCAATTTGAAGTTCAGAATGACCCATTCTGGTCAAGGTCTTCCTTCCACTGTTCTTCACGACATGTTTGAAGGGGGGAATCAATGGACTACACAGGAAGGTCTTGGCCTATATATGTCCAGGAAAATGCTTAGCAGGATGAATGGTCATGTTCACTACGTGAGAGAACAAAAGAAGTGTTACTTCCACATTGATCTTGAACTTAGAACAAGAAAAGAAAGGCAAAGGAATTTGCAAGCAGAGACAAGCATGTTGAGTTAG 3372 0.4244 MKDTSFSTSAASSTNTKTKININKSKALAQYSADAGILAEFEESGMSGKSFDYSKSIVDPPRSVSEDKMIAYLSKIQRGGLIQPFGCMIAIEEPSFRIIGFSENCFQLLGLEGKQFDSKQFSGGLIGVDATTLFTPPSGASLAKAVASREISLLNPVWVYARETQKPFYAILHRIDVGVVIDLEPARSSDPALSFAGAVQSQKLAVRAISRLQSLPGEDIGLLCDTVVEEVQKLTGYDRVMVYKFHEDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFRQNRVRMICDCHAKPVKVFQSEELRQPLCLVNSTLRSPHGCHTQYMANMGSIASLVMAIIVNGKDTTRLWGLLVCHHTTPRYVPFPVRYACEFLMQAFGVQLYMEIQSATQMEEQRILKTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALYYEGSCWVLGTTPTESQVKDITEWLLSNHGDSTGLSTDSLADAGYPDAALLGDAVCGMATARISSRHFLFWFRSHTAKEVKWGGAKHHPEEKDDGGKMNPRSSFKAFLEVVKRKSLPWEVSEINAIHSLQLIMRDSFQDSDNSGQKTLNHIQKRETAVGVTGMDELSSVAIEMVRLIETATVPIFGVDSGGLINGWNAKMAELTGLQASEAMGKSLVNEVVHVDSRENLENIQSRALQGQDDKNVELRLKNFGLHQQNEVVYLKVSTCTSRDYTNAVVGVCFVGQDITYEKVVLDKFVKLEGDYKAIIQSLNPLIPPIFASDENACCSEWNAAMERLTGWKRDEVIGKMLPGEIFGSFCRLKGQDTLTNFMILLHRGISGQDFEKFPFGFFDRNGEFIEAYVTANKRIDAGGNMIGCFCFLQIVSSDLNQPSEGRRPQDRKSISESKELAYILQEMKNPLNGIRFTHKLLENTVVSENQKQFLDTSDACERQIMAIIEDTDLGSINEGTMQLNMEEFLLGNMLDAIVSQVMILVRGKNLQLFHEIPDEIKTLSLYGDQIKLQVVLSDFLLNVVSHTPSPNGWVEIKISPGLKIIQDGDEFINLKFRMTHSGQGLPSTVLHDMFEGGNQWTTQEGLGLYMSRKMLSRMNGHVHYVREQKKCYFHIDLELRTRKERQRNLQAETSMLS* 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1718 1123 Pfam GAF domain 219 389 IPR003018 GO:0005515
Dod03g1718 1123 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 946 1106 IPR036890 -
Dod03g1718 1123 CDD HisKA 881 936 IPR003661 GO:0000155|GO:0007165
Dod03g1718 1123 Pfam His Kinase A (phospho-acceptor) domain 883 945 IPR003661 GO:0000155|GO:0007165
Dod03g1718 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 612 720 IPR035965 -
Dod03g1718 1123 SUPERFAMILY GAF domain-like 199 385 - -
Dod03g1718 1123 CDD HATPase_Phy-like 992 1105 IPR044767 -
Dod03g1718 1123 SMART pas_2 739 809 IPR000014 -
Dod03g1718 1123 SMART pas_2 608 675 IPR000014 -
Dod03g1718 1123 Gene3D PAS domain 753 865 - -
Dod03g1718 1123 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 379 IPR016132 -
Dod03g1718 1123 SUPERFAMILY GAF domain-like 397 574 - -
Dod03g1718 1123 Pfam Phytochrome region 402 576 IPR013515 GO:0006355|GO:0009584
Dod03g1718 1123 Gene3D PAS domain 609 725 - -
Dod03g1718 1123 SMART gaf_1 219 399 IPR003018 GO:0005515
Dod03g1718 1123 ProSiteProfiles PAS repeat profile. 740 818 IPR000014 -
Dod03g1718 1123 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Dod03g1718 1123 CDD PAS 617 724 IPR000014 -
Dod03g1718 1123 Gene3D - 394 567 IPR043150 -
Dod03g1718 1123 Gene3D PAS domain 75 322 - -
Dod03g1718 1123 Pfam PAS fold 740 859 IPR013767 GO:0006355
Dod03g1718 1123 Pfam PAS fold 609 724 IPR013767 GO:0006355
Dod03g1718 1123 ProSiteProfiles Histidine kinase domain profile. 888 1107 IPR005467 -
Dod03g1718 1123 PANTHER PHYTOCHROME E 17 1112 - -
Dod03g1718 1123 Gene3D - 924 1101 IPR036890 -
Dod03g1718 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 754 856 IPR035965 -
Dod03g1718 1123 Pfam PAS fold 71 186 IPR013654 GO:0006355
Dod03g1718 1123 PIRSF Phytochrome_conventional 2 1114 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Dod03g1718 1123 TIGRFAM sensory_box: PAS domain S-box protein 613 728 IPR000014 -
Dod03g1718 1123 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 993 1105 IPR003594 -
Dod03g1718 1123 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Dod03g1718 1123 PRINTS Phytochrome signature 702 719 IPR001294 GO:0006355|GO:0009584
Dod03g1718 1123 PRINTS Phytochrome signature 504 523 IPR001294 GO:0006355|GO:0009584
Dod03g1718 1123 PRINTS Phytochrome signature 722 742 IPR001294 GO:0006355|GO:0009584
Dod03g1718 1123 PRINTS Phytochrome signature 419 439 IPR001294 GO:0006355|GO:0009584
Dod03g1718 1123 PRINTS Phytochrome signature 628 643 IPR001294 GO:0006355|GO:0009584
Dod03g1718 1123 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Dod03g1718 1123 PRINTS Phytochrome signature 609 625 IPR001294 GO:0006355|GO:0009584
Dod03g1718 1123 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Dod03g1718 1123 PRINTS Phytochrome signature 537 555 IPR001294 GO:0006355|GO:0009584
Dod03g1718 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 76 190 IPR035965 -
Dod03g1718 1123 SMART HKATPase_4 993 1107 IPR003594 -
Dod03g1718 1123 PANTHER TWO-COMPONENT HISTIDINE KINASE 17 1112 - -
Dod03g1718 1123 CDD PAS 751 859 IPR000014 -
Dod03g1718 1123 SMART HisKA_10 881 945 IPR003661 GO:0000155|GO:0007165
Dod03g1718 1123 Gene3D - 200 550 IPR029016 -
Dod03g1718 1123 ProSiteProfiles PAS repeat profile. 606 677 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1718 Dod-Chr3 24875212 24881571 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1718 6 1107 Histidine Kinase Gene Family AT4G18130 62.870 0.0 1475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1718 K12123 - gmx:100808192 1920.59