Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1679 ATGCAGAGCCAAATCGTGTGTAGTGGCTGTAGGAGCGTTTTGTTTTACCCTAGAGGGGCAGCTAATGTTTGCTGTGCTTTGTGCAACACAATTACCTCTGTTCCTTCCCCTGGAATGGATATGTCACAAATTTATTGTGGAGGCTGTAGGACATTGCTGATGTACACACGTGGAGCTACAAGTGTGAGATGTTCCTGCTGCCACACTGTAAACCTTGTTCCAGCATCTAATCAAGTCAGCCATATCCATTGTGGGAACTGCCGGACAACACTCATGTATCCATATGGAGCTCCCTCAGTCAAATGTGCAATTTGTCATTATATTACCAATGTCAATACAACCAATGGAAGGCTTCCAGTTCCTGTCCAGAGACCTGGTGAAGCAACCAACCCTGAATCAGTATCTTCTACTCCAGCATCAATGCCCAACTCTCTGAGCCAAACTGTTGTGGTAGAAAATCCTATGTCTGTTGATTCAAGTGGGAAATTGGTGAGCAATGTTGTTGTTGGTGTTACAACAGATAAGAAGTGA 531 0.4444 MQSQIVCSGCRSVLFYPRGAANVCCALCNTITSVPSPGMDMSQIYCGGCRTLLMYTRGATSVRCSCCHTVNLVPASNQVSHIHCGNCRTTLMYPYGAPSVKCAICHYITNVNTTNGRLPVPVQRPGEATNPESVSSTPASMPNSLSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1679 176 MobiDBLite consensus disorder prediction 116 144 - -
Dod03g1679 176 Pfam LSD1 zinc finger 84 108 IPR005735 -
Dod03g1679 176 Pfam LSD1 zinc finger 46 70 IPR005735 -
Dod03g1679 176 Pfam LSD1 zinc finger 7 31 IPR005735 -
Dod03g1679 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Dod03g1679 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 43 73 IPR005735 -
Dod03g1679 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 81 110 IPR005735 -
Dod03g1679 176 MobiDBLite consensus disorder prediction 128 144 - -
Dod03g1679 176 PANTHER PROTEIN LSD1 1 174 IPR040319 -
Dod03g1679 176 PANTHER LSD1-LIKE PROTEIN 1 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1679 Dod-Chr3 23675370 23688858 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Dod03g1679 zf-LSD1 5.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1679 - - gmx:100776394 317.005