Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1677 ATGGAACAGTTGAAATTGACTTCAGAATCTGACACCAGAGAGGATTCTCATCTTAAGCCAGAGCCAAAAAATAACAATGCATTGGAGTCTTCTGGCAGTCCAAGATGTAGAAAGTTATCAGCTAGATGGGATCCAGTTGATGCATGTCGGCCTATAATTGATGAAGCACCTGTATTTTATCCGACTGTTGAGGAATTTGAAGACACACTTGACTACATAGCAAAAATCCGGCCCCAAGCTGAACCCCGTGGAATATGTAGAATTGTCCCTCCTGCTTGCTGGGTACCCCCTTGCCCCCTCAAGGAGAAAGATCTATGGGAAAGTGCTAAATTTCCCACACGTATTCAGCAAATCGATTTGCTTCAAAACAGGGAGCCCATGAGAAAAAAAAGTAGGGGCAGGAAAAGAAAACGTAGAAAGCACTCCAAAACAGGCACATGTAGGAGACTTGCCAATTTGAGTTCAGGAGCTAATAATGCTTCTGAACCTGATGAGAAATTTGGATTCCAGTCAGGCTCAGACTTCACATTTAAAGACTTTCAACAGTATGCTAATTATTTTAAGGAATGCTACTTTCGGTTGAAAGATGCTAATGGAGACGAAGTTAGTGATAACAACCTCCAGAACAGATTGGAGCCCTCTGTGGAGGAAATTGAAGGTGAATACTGGCGCATTATTGAGCAACCAACTGATGAGGTCGAGGTGTATTATGGAGCTGACGTGGAAACTGGTTCACTTGGAAGTGGTTTTCCTAAAGCATCATCCTTAACTAAGAGTGACTCAGATCAGTATGCTCTATCTGGGTGGAATCTGAATAATTTCCCGCGACTACCGGGTTCTGTTCTGAGTTTTGAAGGAAGTGACATCTCAGGAGTTCTTGTGCCATGGCTGTATGTTGGCATGTGCTTTTCATCCTTTTGCTGGCATGTTGAGGATCATCACCTCTATTCGCTCAATTATCTGCACTGGGGTGACCCAAAAGTATGGTATGGAGTACCTGGAAGCCATGCTTCCGCTTTGGAAGATGCAATGAGGAAGCACTTGCCTGATTTATTTGAGGAACAACCAAATCTACTCAATGAACTGGTTACTCAGTTATCTCCTTCGATTCTTAAATCTGAGGGTGTGCCTGTATATCGCACTGTTCAGCATTCTGGGGAGTTTGTTATTACTTTTCCTAGGGCATACCATTCTGGCTTCAATTGTGGCTTCAACTGTGCAGAGGCAGTAAATGTGGCTCCTGTTGATTGGCTAATGCATGGGCAAAATGCTGTTGAGCTTTACAGTTTGCAGTGCCGTAAGACATCATTGTCACATGACAAGCTCTTATTTGGATCAGCACAGGGAGCTGTACAAGCCCTTGCAGAACTAGCCCTTCTTGGAAAAGAAACTCCAAAAATTTTGAAATGGAGAAGTGTCTGTGGGAAAGATGGAGTTCTGACAAAGGCCGTTAAGACAAGAATAAAGTTGGAAGAAGAGAGGCTAGAATGCCTTGCAAATCATCTCAAGTTGCTGAAGATGGACAGAGACTTTGATTTGTACGAGGAAAGAGAATGTTTCTCTTGCTTCTATGACTTGCACCTATCTGCTGTGGGTTGCAATTGCTCTCCTAACAGATATTCTTGTCTTAGGCACTCAAATTCATTATGCTCCTGTGCAATGGACAAAAGATTTGTTCTGCTTCGTTATACTATTGATGAGCTAAATAAATTGGTTGAAGCATTAGAAGGAAAGTCACTTGCTATTGAAATGTGGGTAAATAAAAGCTCTGGAAAGGTTTCTACTGATGTTTGCATATATAAACCACATGTGGAGAGAGACATGTACAAATCCAAGAATAATGAAGAGGAAAGCTCAATCGGTTGTGCAGGAACAAAGGATAACTCAAATTTAAATGTATTTAGTAGGCCTTATATTCATGTTACTTCAGAGATAATGCAGTGTCGGTCTCAACATCAGCGTGTAACTTCTGGTGCATCATATGCCACTATAGAGAGTCATAATATTGATAAAAAATTGGTGATAGACAATGGAGATAAGGTGAATCAGGCAGATTATTTGGATTTGAATGTTGATGTTATATCTGGTGAAGATGAAAATGATATGCAATTTATTGCTGGTAACCATCATAATAAGGGCCATTCAATGGACAAAAAAGTATGCTGCTCCGATTCCGGAAAGGAACAAGACAACACAGAACTTGATGGTAAGGGTAACCTATCACACTTGTTTTGTGTTCCCAGGACAAAATTTTCATCATGTTCAAGGGATGTTCACTATTCATGTACGTTTGATGGTGGAAAATTTGAAGTAGATCTGCAAATGGATTCTGATCCAGGAAAGCAGCCCAGTAGTATATTTAAAAAGGAAGTCATTGACACCATGGACACAACCATATCTTTGACCAGCGAAAGCTATCTCATGCAATTGTTTGGTACTACTGTGAAGCTTATAAGTTTGGGATCTGTTGTCTATGGAAAGCTTTGGTGCAGTAAGCAAGCAATATATCCGAGAGGATTCAAGAGTCGAGTTATTTTCTTTAGTATTCTTGATCCAGCAAAAATGTGTAGCTATATTTGTCAAGTTGTTGATGCTGGATTTCTTGGACCACTTTTCAAGGTTACCATGGAAGAACATCCAAATGAGGCTTTCACCGATACCACACCAGACAGGTGCTGGGAATCAGTTCTAAAGAGACTATGTCATGAAATCATCAGGCGTAGGAGTCTAGGTGAACTAGAACTTCCTCCCTTAGAATTTCTGAAAAGCATAAATGGTCTCAGAATGTTTGGCTTCCATTTACCATCCATTATCCAGGCCATCGAAGCTCAAGATCTCACTCGTCAGTGTGTGGAGTATTGGAATCACAAAGTTGTTCCTGCCTCTTCGGGCAGTGCCATTGATAACTTAAAGTTGACGGATGGTTCAAGTAGCAACTCTTTACGTGTCAATACCAAAATTTTTGGTATCAATTTGATTAAGCAGGAAAAGGGTGACATGGGTAGAAGTTGTCATTCCCTTGAAGAGGTGAAATCAATATTACAAGGATTGCTTACAAAGGCAAGTCCTAATGAGTTAAGCACAATGCATAAGTTATTCAGTTCTGATGCTTTGTGCTCTCAGTGGAGAACGACATTCTTAGCACTAATTGAGGAGATCAATAAAGCCTGTGGGATAAAACAAGAATAA 3189 0.4073 MEQLKLTSESDTREDSHLKPEPKNNNALESSGSPRCRKLSARWDPVDACRPIIDEAPVFYPTVEEFEDTLDYIAKIRPQAEPRGICRIVPPACWVPPCPLKEKDLWESAKFPTRIQQIDLLQNREPMRKKSRGRKRKRRKHSKTGTCRRLANLSSGANNASEPDEKFGFQSGSDFTFKDFQQYANYFKECYFRLKDANGDEVSDNNLQNRLEPSVEEIEGEYWRIIEQPTDEVEVYYGADVETGSLGSGFPKASSLTKSDSDQYALSGWNLNNFPRLPGSVLSFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHASALEDAMRKHLPDLFEEQPNLLNELVTQLSPSILKSEGVPVYRTVQHSGEFVITFPRAYHSGFNCGFNCAEAVNVAPVDWLMHGQNAVELYSLQCRKTSLSHDKLLFGSAQGAVQALAELALLGKETPKILKWRSVCGKDGVLTKAVKTRIKLEEERLECLANHLKLLKMDRDFDLYEERECFSCFYDLHLSAVGCNCSPNRYSCLRHSNSLCSCAMDKRFVLLRYTIDELNKLVEALEGKSLAIEMWVNKSSGKVSTDVCIYKPHVERDMYKSKNNEEESSIGCAGTKDNSNLNVFSRPYIHVTSEIMQCRSQHQRVTSGASYATIESHNIDKKLVIDNGDKVNQADYLDLNVDVISGEDENDMQFIAGNHHNKGHSMDKKVCCSDSGKEQDNTELDGKGNLSHLFCVPRTKFSSCSRDVHYSCTFDGGKFEVDLQMDSDPGKQPSSIFKKEVIDTMDTTISLTSESYLMQLFGTTVKLISLGSVVYGKLWCSKQAIYPRGFKSRVIFFSILDPAKMCSYICQVVDAGFLGPLFKVTMEEHPNEAFTDTTPDRCWESVLKRLCHEIIRRRSLGELELPPLEFLKSINGLRMFGFHLPSIIQAIEAQDLTRQCVEYWNHKVVPASSGSAIDNLKLTDGSSSNSLRVNTKIFGINLIKQEKGDMGRSCHSLEEVKSILQGLLTKASPNELSTMHKLFSSDALCSQWRTTFLALIEEINKACGIKQE* 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1677 1062 MobiDBLite consensus disorder prediction 1 35 - -
Dod03g1677 1062 Pfam jmjN domain 57 90 IPR003349 -
Dod03g1677 1062 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 10 1056 - -
Dod03g1677 1062 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Dod03g1677 1062 SMART fyrn_3 821 864 IPR003888 GO:0005634
Dod03g1677 1062 Coils Coil 488 508 - -
Dod03g1677 1062 MobiDBLite consensus disorder prediction 122 145 - -
Dod03g1677 1062 SUPERFAMILY Clavaminate synthase-like 171 448 - -
Dod03g1677 1062 Pfam JmjC domain, hydroxylase 296 412 IPR003347 -
Dod03g1677 1062 MobiDBLite consensus disorder prediction 128 145 - -
Dod03g1677 1062 ProSiteProfiles FYR domain FYRN motif profile. 807 865 IPR003888 GO:0005634
Dod03g1677 1062 SMART fyrc_3 871 963 IPR003889 GO:0005634
Dod03g1677 1062 Pfam F/Y-rich N-terminus 814 862 IPR003888 GO:0005634
Dod03g1677 1062 Pfam F/Y rich C-terminus 869 956 IPR003889 GO:0005634
Dod03g1677 1062 Gene3D - 811 951 - -
Dod03g1677 1062 PANTHER LYSINE-SPECIFIC DEMETHYLASE 10 1056 - -
Dod03g1677 1062 SMART JmjN_1 55 96 IPR003349 -
Dod03g1677 1062 MobiDBLite consensus disorder prediction 1 22 - -
Dod03g1677 1062 SMART cupin_9 263 429 IPR003347 -
Dod03g1677 1062 Gene3D Cupin 41 413 - -
Dod03g1677 1062 ProSiteProfiles JmjC domain profile. 263 429 IPR003347 -
Dod03g1677 1062 Pfam C5HC2 zinc finger 519 571 IPR004198 -
Dod03g1677 1062 ProSiteProfiles FYR domain FYRC motif profile. 867 957 IPR003889 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1677 Dod-Chr3 23611528 23620539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1677 811 993 JUMONJI Transcription Factor Family AT1G30810 45.355 2.12e-44 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Dod03g1677 JmjC 3.2e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1677 - - gmx:100801775 1561.97