Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1662 ATGGAAGCTAAATTTGGGGGAAAGAATCAGTACTTGTATGGGCCAATGGTTCCTGAGATGAAGGCTGTTGGGGAGAGGAGTCTGGAGTGGGATTTGAATGATTGGAGATGGGATGGGGATCTTTTCACTGCCAGGCAGCTGAATTCAGTGCCTTCAGATTGCAGGAGCCGTCAACTGCTCCCAGTTGATCCTGAGGCTCCTGCAAATGCTGACACTTCTAATGTCAATTTGTCCCCTGGCAGGGATGATACCAACCATGGGGATGGTAAGAGAGAATTGGAGAAGAGGAGGAGAGGTGTTGTTGATGTCGCCGAAGGCGGCGGCGGCGGCTGCGGGGAGATGAATGATGAGGCTGGTTCTCTTAACTTGAACCTTGGGGGTCAAGTGTACCCTATCATGGAAGGAGATGAGAAGAGTGGGAAGAAGACAAAGATAACTGGGACTAGCTCGAGCCGCGCTCTTTGTCAGGTGGAAGATTGTAGGGCTGATCTTAGTAATGCCAAGGATTATCACCGTCGACATAAGGTTTGTGATATGCATTCGAAGGCTAGCAAGGCGCTGGTGGGCAATGTTATGCAGCGGTTCTGTCAGCAGTGTAGTAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGGCGTCTGGCAGGCCACAATAAGAGGCGGAGAAAAACACATCCTGATGCTACTGCAGTTAATGGTGGCTCACTGAATGATGAAAGAGGCAGTAGCTATCTGTTAATGAGTCTGCTAAGGATACTGTCCAACATGCATTCAAATGGCTCAGATCATACAAGAAACCAGGATGTTCTCTCGCATCTCCTGAGGAACCTTGCTAGTCTGGCTAGTACAATCGATGGGAGAAATATAGCATCCTTATTGGAGGGGTCTCAAGATTTTGGAAGTGCTGGGACATCAGGAGTTGCGCAGAATGTTCCAAACACGAATTCAAACTGCCCTGAACCATCCAGACCTTTTAATTCTCCAATGAAGATGGATAATGGTATAACCCATCAGGACCCTTCGGATTCTAGGGTACAGTGTGAGACTATGCCTGCAGATGATATTGGACAAAAATGTATACCTTCAGGTAGCGATGGAATGCGAAGCTTGAAATCTCCTTCAGGACCACAATCTGCAAATGTACTTCTGTCAAGGGACAGTCTTCCACCCCAATCAGCTGCAGCCGAGACTACAGTTGGAAGGAATGGCTTAAATAACATTGACCTGAATAATGTATATGATGATGTACAAGATTATGCTGAGAACCCAAGTATCTCTTGTCCTCCTGTTGCCTCGGGGATTGGGTCTCTTGATCACCCTTCACGGTTACAATGTGATTCTCTTAAGTCAAGTCCGCCACAGACAAGTAGAAACTCAGATTCAACCTCTAGTCAGTCACCATCTAGTTCAAGTGGAGAAGCTCAGAGTCGCACAGATCGCATTGTTTTCAAGCTCTTTGGCAAGGATCCAAGTGATTTTCCCCTTGTTGTCCGATCACAGATCCTTAACTGGTTATCCAACAGTCCCACAGAGATAGAGAGCTATATAAGGCCAGGCTGTATCATATTAACTGTATATCTCCGTCTAGAAAATTCTGAATGGGAGGAGCTATGCTACAATCTAGGATCCAGCTTAAGAAAGCTTCTCGATGCATCAAATGATTCTTTCTGGAGAACAGGATGGGTATATACAAGGGTGCAGGACTCAGTCGCTTTTCTCTATAATGGTCAGGTGGTCTTAGATGTGCCATTACGCCTCAAAAACCAACGAAATTGTCAGATTTTGGGCATTAAGCCAATTGCTGTTCCTGCAAGTGCAAGTGCTCAATTTATTGTGAAAGGATTCAACCTTCTCCTGTCTAACAGGAGGTTGCTCTGCGCACTTGAAGGGAAGTATCTGGTACAGGATAGCTGTCATGATTTGATTGATGGTGCTGATGCAGCCATTGAACATGATGGGCTTCAGCATCTCAGCTTCTCTTGTCATGTACCAAATGTGACTGGGAGAGGGTTTATTGAGGTGGTGGAAGATAATGGTCTTACCAGCTGTTCATTTCCATTCATAGTTGCAGAGCAAGAAATATGTTCAGAGATCTGTAAGCTGGAGCATGTCATCGAGGAAGCGGACACTGCTGATGATATCCAGATGAAAACCAAATTAATGGAAGAAAAGACTCGAGCATTGTATTTCATACAAGAAATGGGTTGGCTTCTTCACAGAAGTCGTGTGAAAGTCAGGCTAGGTCCCATGGCCCCCGTCCAAGATTGCTTCCATTTTAATCGGTTCACGTGGCTTGTTGGCTTCTCCATGGACCATGATTGGTGTGCTGTGATTAAAAAACTCTTGGACATTATATTTGAGGGTGCTGTTGACACCGGAGAGCATACCTCCGCAGAGCTTGCATTGCTCGACATGGGTCTTCTACACAGAGCTGTAAAGAGAAATTGCAGGTCTATGGTGGAACTACTGTTAAATTTTGTGCCAGTTAAAGCTTCAGATGGTGGAGACAGCAAAGGCAAGCAATTCAACAAGTCCCCTGACAGATTCTTGTTTAGACCTGATACAGTTGGGCCTGCTGGGTTGACTCCCCTTCATGTTGCAGCAAGTATGACTGGCTCAGAGAATGTATTGGATGCATTAACCGATGATCCAGGAATGGTGGGAGCTGAGGCATGGAAAAGTGCTCGGGATAGTACAGGTTTGACGCCCAACGACTATGCATCCCTGCGAGGATACTACTCCTACATTCAACTTGTCCAGAGGAAAACAGGAAAGAAACATGAAGGTCAACATGTGCTTGATATCCCTGGCACACTCTTGGACTGTAACACGAAGCAGAAGCAATCAGCTGGGCACAGGTCATCAAAAGTTTCGAGTTTGCAGACTGAGAAGATTGGAAAAATAGCAGTGGCGCATCAATGTGGGTTATGCCAGAGCAAGCTGGCATATAGTGGCATGAGAAGGGCGGTGGTTTATAGGCCGGCGATGCTGTCAATGGTGGCCATTGCAGCAGTTTGTGTCTGTGTGGCTTTGCTCTTCAAAAGCTCACCCCGAGTTTACTTTGTATTCCAGCCCTTCAGCTGGGAATCATTGGAGTATGGGTCAATGTAA 3126 0.4616 MEAKFGGKNQYLYGPMVPEMKAVGERSLEWDLNDWRWDGDLFTARQLNSVPSDCRSRQLLPVDPEAPANADTSNVNLSPGRDDTNHGDGKRELEKRRRGVVDVAEGGGGGCGEMNDEAGSLNLNLGGQVYPIMEGDEKSGKKTKITGTSSSRALCQVEDCRADLSNAKDYHRRHKVCDMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDATAVNGGSLNDERGSSYLLMSLLRILSNMHSNGSDHTRNQDVLSHLLRNLASLASTIDGRNIASLLEGSQDFGSAGTSGVAQNVPNTNSNCPEPSRPFNSPMKMDNGITHQDPSDSRVQCETMPADDIGQKCIPSGSDGMRSLKSPSGPQSANVLLSRDSLPPQSAAAETTVGRNGLNNIDLNNVYDDVQDYAENPSISCPPVASGIGSLDHPSRLQCDSLKSSPPQTSRNSDSTSSQSPSSSSGEAQSRTDRIVFKLFGKDPSDFPLVVRSQILNWLSNSPTEIESYIRPGCIILTVYLRLENSEWEELCYNLGSSLRKLLDASNDSFWRTGWVYTRVQDSVAFLYNGQVVLDVPLRLKNQRNCQILGIKPIAVPASASAQFIVKGFNLLLSNRRLLCALEGKYLVQDSCHDLIDGADAAIEHDGLQHLSFSCHVPNVTGRGFIEVVEDNGLTSCSFPFIVAEQEICSEICKLEHVIEEADTADDIQMKTKLMEEKTRALYFIQEMGWLLHRSRVKVRLGPMAPVQDCFHFNRFTWLVGFSMDHDWCAVIKKLLDIIFEGAVDTGEHTSAELALLDMGLLHRAVKRNCRSMVELLLNFVPVKASDGGDSKGKQFNKSPDRFLFRPDTVGPAGLTPLHVAASMTGSENVLDALTDDPGMVGAEAWKSARDSTGLTPNDYASLRGYYSYIQLVQRKTGKKHEGQHVLDIPGTLLDCNTKQKQSAGHRSSKVSSLQTEKIGKIAVAHQCGLCQSKLAYSGMRRAVVYRPAMLSMVAIAAVCVCVALLFKSSPRVYFVFQPFSWESLEYGSM* 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1662 1041 Gene3D - 146 216 IPR036893 GO:0003677|GO:0005634
Dod03g1662 1041 MobiDBLite consensus disorder prediction 308 331 - -
Dod03g1662 1041 Gene3D - 779 961 IPR036770 -
Dod03g1662 1041 ProSiteProfiles Zinc finger SBP-type profile. 152 229 IPR004333 GO:0003677
Dod03g1662 1041 MobiDBLite consensus disorder prediction 372 412 - -
Dod03g1662 1041 SUPERFAMILY Ankyrin repeat 810 923 IPR036770 -
Dod03g1662 1041 SUPERFAMILY SBT domain 153 234 IPR036893 GO:0003677|GO:0005634
Dod03g1662 1041 MobiDBLite consensus disorder prediction 221 241 - -
Dod03g1662 1041 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 14 1040 IPR044817 GO:0003677
Dod03g1662 1041 MobiDBLite consensus disorder prediction 448 481 - -
Dod03g1662 1041 MobiDBLite consensus disorder prediction 359 412 - -
Dod03g1662 1041 MobiDBLite consensus disorder prediction 83 102 - -
Dod03g1662 1041 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 14 1040 - -
Dod03g1662 1041 Pfam SBP domain 155 228 IPR004333 GO:0003677
Dod03g1662 1041 MobiDBLite consensus disorder prediction 55 114 - -
Dod03g1662 1041 MobiDBLite consensus disorder prediction 446 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1662 Dod-Chr3 23319032 23326567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1662 24 1040 SBP-box Gene Family AT3G60030 46.829 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dod03g1662 SBP 5.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1662 - - gmx:100776125 1648.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2515 05 51376986 51384497 Dod03g1662 03 23319032 23326567 PCT