Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1630 ATGGCTTCTGATTCTGTTCCACCAACCATGCCTCTAACCGTGGTTGGATACACCACCACTCAACCTAAACACTCTCCGTCACACAGCCCCAAGCCAAACTTTCTCATACCGGTGACGGTCGTTGCCGTCGCCGTCTCCAGCTCCTTCGCTCTCTACTTCCTCATCCGTTACTTCCGCCGTCACTACCGCCATCCCTCTCCGTCAACCGCCGCGTCCACCGCGGTGTTCTCCTCCTCCGGGAGCCGAATATCACCGGAAATCACCGCACCTTCCGCCGTGGACTCCCTCCCGCTGTTCGCTTTTTCCTCCGTCACCCGCCGCTCGTCCTCCGCCGCCGACTGCGCCGTTTGCCTTTCGAAGTTCGAGCAGCGCGACCTCCTCCGCCTGCTCCCTCTCTGCTGCCATGCCTTCCACGCCGAATGCATCGACGTCTGGCTCCGATCGAACCTCACCTGTCCGCTCTGCCGATCCGCCGTCTTCGCGTCGGAATCCGACGTCGCGAGGATCCTCCGGTCCTCGTCCTCCGCCGCCGGCGACAGCTTCCGCCTCGAGATAGGTAGCATCAGCCGCCGCCGAACCGCGTCCTCTGCCGCAAACGCCGCCGTAGAAACGCGCGAAAGGACCTATTCGGTTGGCGAGTTCGACTACCTCGTCAATGACGACGCTGAGATTCCATTCAGTCAGGCTCGCCGGAGAAACGATTCAGGCGAGAAGCACGATGCTGCGGCGGTGGAGCCACCGGCGGCGAGCTTGGCCGGCGGAGGGAGCTGGAAGGATGATTCTGATTTGGTTTCGGCTTCGATATCGTCGGTGTCGTTTCGAAGCTCAGGAAGGTTCTTCACTGGGAGTAGCAGGCGAAGTGACGTCGATCCGGTGGGAGATTACGACGTGGAAGCCAACCGTTTTGGGGAAGAAATCAGCGAAATGTTTGGATGGCTCTCAGTGGCATAA 951 0.6057 MASDSVPPTMPLTVVGYTTTQPKHSPSHSPKPNFLIPVTVVAVAVSSSFALYFLIRYFRRHYRHPSPSTAASTAVFSSSGSRISPEITAPSAVDSLPLFAFSSVTRRSSSAADCAVCLSKFEQRDLLRLLPLCCHAFHAECIDVWLRSNLTCPLCRSAVFASESDVARILRSSSSAAGDSFRLEIGSISRRRTASSAANAAVETRERTYSVGEFDYLVNDDAEIPFSQARRRNDSGEKHDAAAVEPPAASLAGGGSWKDDSDLVSASISSVSFRSSGRFFTGSSRRSDVDPVGDYDVEANRFGEEISEMFGWLSVA* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1630 316 Pfam Ring finger domain 113 156 IPR001841 -
Dod03g1630 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 160 IPR013083 -
Dod03g1630 316 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Dod03g1630 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 10 304 - -
Dod03g1630 316 MobiDBLite consensus disorder prediction 231 257 - -
Dod03g1630 316 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 10 304 - -
Dod03g1630 316 SUPERFAMILY RING/U-box 93 162 - -
Dod03g1630 316 SMART ring_2 114 155 IPR001841 -
Dod03g1630 316 CDD RING-H2_PA-TM-RING 113 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1630 Dod-Chr3 22661745 22663294 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1630 31 185 C3H Transcription Factor Family AT2G20030 36.471 2.94e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1630 K10663 - gmx:100804962 287.345