Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1629 ATGATGTTCCATTCTCAGGGTCCTTCAAGGCATTGTAGCCTCCTTGCTGTCCTGGGTGGTAAATCACGTGACAATAAGCAAAAGCAGAAGAAGGATGCTGCTTCGGAGAATCAATCTTCATACCCCTTTTCAGAGCTTTCCTCTTCTGGGCGTCTTGAGGTAAAAGTGTTGACTAAACCTACTGCTGATGAACTCAGCCGTGTACTTGAACAACTGCAGCCGGATTTTGTTTACCTTCAAGGCAAACAGCTAGAAGATAGTGGAGAAATCGGTCCTCTTGTATGGGAAGATTTTGACTTGTCTACCCCAGAAGCTTTATGTAGATTATTTTCTTCAAAATTACCTAATACTGTTTATTTGGAAACTCCTAAGGGAGAAAAGTTGGCAGAGGCACTCCGTTCTAAGGGAATTTCTTACACTATATATTGGAAAAATGATTTTTCAAAGTATGCAGCTTCACATTTTCATCAAGCTTTTTTCTCAGTGGCACAGAGTACATCCAGCCATACATGGGATGCTTTCCAGCTTGCTCTTGCATCTTTCAGACTATACTGTGTACGAAACAATGTCTTACCTTCTAACAATCAGAAGGGTGGTGGTAAGCTTGGCCCACAAATTCTTGGTGACCCTCCCAACATTGATGTTAGTCCAGGACCAGGTGAAGCAGATATGAAGCAGGATGAGGAAAGTGAACCTGGGAGTATTTCTGCTTTAAAGATATATGATAATGATGTGAACATGAGATTTCTTGTTTGTGGAGTTAGTTGCACATTGGATGCTTTTTTATTGGGGTCATTAGAGGATGGACTCAATGCTCTTCTATGTACAGAAATACGTGGATGTAAACTTCACAACCGGACAAGTGCTCCACCGCCTCCTCTCCAGGCAGGAACATTCTCACGTGGTGTGGTGACCATGCGATGTGATATATCCACATGTAGTTCTGCTCATATATCACTTTTGGTGTCTGGTAGTGCAGACACTTGTTTTAATGATCAGCTCCTAGAGAATCATATTAAAAAAGAGCTCATTGAGAAGAGTCAGCTTGTTCACGCAGTTCCTAATCATGAACAAAGCAAACTATCTTACTCCGAGCCTCGAAGATCAGCCTCAGTTGCCTGTGGATCAAGTGTCTTTGAAGTTTGCATGCGAGTTCCTACATGGAGTTCACAGGTTCTGAGACAGCTTGCGCCGAATGTATCATACCGTAGCCTAGTTATGTTGGGAGTTGCTAGTATTCAAGGATTGCCAGTTGCATCTTTTAATAAAGATGATGCCGAACGCCTCCTTTTCTTTTGTACTAGGCAGGGGAAAGAAAACTGTCCTAAGGATCCTGTTTTCTCTGGGCATCCTACTTGGCTGACACCTCCAGTACCTAGTCGAAAAAGATCTGAACCATGCTCTAGAGCAAAGTCTATCAATTCAAGTGGTGTGGACGTTGAGGGTATTCATAGTGATAGACATAAATTAAATTTTGCTGCAATGAGACCAATCCCTCACTCTAATCGCCATAAGATTCTCCCTTTTTCGGGATTGTCTGAGGGTGAAAGACATGATGGAGAACATGGAAAATCAAATCAGCTACTTGCTCCTATTAAGCATAATGTTGTAGGTGCAAATTCAGTTACACATAGGAAATCTGTGTCAAACTCATTTCAAGCTCATCAGATTATTTCTCTGAATCCACTACCTATGAAAAAGCATGGTTGTGAGAGAGCTCCTATACGAGTTTGCTCAGAGGAGGAATTCCTGAGGGATGTAATGCAGTTTCTGATCCTTCGAGGGCATACTCGTCTCATCCCACAGGGTGGGCTTGCTGAGTTTCCTGATGCCATTCTGAATGCAAAACGTCTTGATCTTTTCAACTTGTACAGAGAGGTGGTTTCAAGAGGAGGCTTTCATGTTGGGAATGGTATCAACTGGAAGGGACAAGTTTTCTCAAAGATGCGCAATCACACTTTGACAAATAGAATGACTGGTGTTGGCAATACACTGAAAAGACATTATGAAACTTATCTTTTAGAATACGAATTAGCTCACGATGATGTTGATGGAGAGTGCTGCCTGTTGTGTCACAGTAGTGCAGCAGGTGACTGGGTGAACTGTGGTATATGTGGTGAGTGGGCTCACTTTGGTTGTGATAGGCGGCAGGGTCTTGGGGCATTTAAGGACTATGCTAAAACTGATGGGCTGGAGTACGTTTGTCCTCACTGCAGCATATCAAATTTCAGTAAAAAATCCCAGAAAACTGCAAATGGATACTAA 2265 0.4247 MMFHSQGPSRHCSLLAVLGGKSRDNKQKQKKDAASENQSSYPFSELSSSGRLEVKVLTKPTADELSRVLEQLQPDFVYLQGKQLEDSGEIGPLVWEDFDLSTPEALCRLFSSKLPNTVYLETPKGEKLAEALRSKGISYTIYWKNDFSKYAASHFHQAFFSVAQSTSSHTWDAFQLALASFRLYCVRNNVLPSNNQKGGGKLGPQILGDPPNIDVSPGPGEADMKQDEESEPGSISALKIYDNDVNMRFLVCGVSCTLDAFLLGSLEDGLNALLCTEIRGCKLHNRTSAPPPPLQAGTFSRGVVTMRCDISTCSSAHISLLVSGSADTCFNDQLLENHIKKELIEKSQLVHAVPNHEQSKLSYSEPRRSASVACGSSVFEVCMRVPTWSSQVLRQLAPNVSYRSLVMLGVASIQGLPVASFNKDDAERLLFFCTRQGKENCPKDPVFSGHPTWLTPPVPSRKRSEPCSRAKSINSSGVDVEGIHSDRHKLNFAAMRPIPHSNRHKILPFSGLSEGERHDGEHGKSNQLLAPIKHNVVGANSVTHRKSVSNSFQAHQIISLNPLPMKKHGCERAPIRVCSEEEFLRDVMQFLILRGHTRLIPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSISNFSKKSQKTANGY* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1629 754 SUPERFAMILY FYVE/PHD zinc finger 680 742 IPR011011 -
Dod03g1629 754 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 681 744 IPR013083 -
Dod03g1629 754 MobiDBLite consensus disorder prediction 22 45 - -
Dod03g1629 754 CDD PHD_ARID4_like 687 738 - -
Dod03g1629 754 Pfam ARID/BRIGHT DNA binding domain 580 677 IPR001606 GO:0003677
Dod03g1629 754 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 754 IPR042293 -
Dod03g1629 754 SUPERFAMILY ARID-like 578 692 IPR036431 GO:0003677
Dod03g1629 754 ProSiteProfiles ARID domain profile. 577 681 IPR001606 GO:0003677
Dod03g1629 754 MobiDBLite consensus disorder prediction 196 230 - -
Dod03g1629 754 SMART ARID_2 574 677 - -
Dod03g1629 754 MobiDBLite consensus disorder prediction 452 478 - -
Dod03g1629 754 CDD ARID 579 677 - -
Dod03g1629 754 Gene3D - 575 680 IPR036431 GO:0003677
Dod03g1629 754 PANTHER ARID/BRIGHT DNA-BINDING DOMAIN PROTEIN 4 754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1629 Dod-Chr3 22613442 22625838 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1629 2 753 ARID Transcription Factor Family AT3G43240 67.196 0.0 1011
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Dod03g1629 ARID 9.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1629 - - gmx:100808357 1326.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1629 03 22613442 22625838 Dod03g1629 03 22613442 22625838 ECH