Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1628 ATGGTACCAAACAAGAAGCACAAAACGATCGCACCCACACCCCCTTCGAACGAGGTCATCGACGTGGAAGCTTTCGTCTTGACGCCAATCTCGCACAAGGGCACCAACAACTCCGCACCCATCTCCGTCGAGCAGTACGCCCTCGACAGGGACCTCCACCGCGCCATCGCCGCCTCCCTCGGCCTTCCCACCAACGCAAACAACAACCTCATCTACCTCTCCGACGAAGAAAACGAAGACGTCACGATCCTCACCTCCAAGCCCCAGCACACCCCTTTCGGACCACGGAAAAGGAAAAACAGAGAAAGAGGAGAGTCCTCAAACAGCGCGCAACCATTCGATTGCGAAATCTGCACCGAGACAAAGACCAAAAAGGACTCTTTCGGCATAACCGGTTGCTCCCACTCTTACTGCATTGATTGCGTGGTGATGTACGTGGCCTCGAAGCTTCAGGAAAACGTGATGAACATCCAGTGCCCGGTTCCCGGTTGCGCGGGGCTGCTGGAGCCGGAGAGCTGCCGCGAGATTCTCCCGGAGGAGGTTTTTGATCGGTGGGGGAAGGCGCTTTGTGAGGCCGTGATTGTTGCTGAAGAGAGATTCTATTGCCCCTTCAAGGACTGCTCTGCGCTGATGATCGACGACGGGGGAGAGGTGGTTAGGGAATCGGAGTGCCCCAATTGTAGGAGGCTGTTCTGTGCGCAGTGCAAGGTGCCTTGGCATGATGGGATTGAGTGCGAGGAGTTTCAGAAGCTGAACAAGGATGAGAGGGAAAAGGAGGATATCATGCTGATGAAGCTGGCAGAGAGCAAGAAGTGGAGGAGGTGCCCCAAGTGCAGGTTCTATGTTGAGAAATCTCAGGGTTGCATGTACATGAGATGCAGGTCAGGTTTTCAATTTCTGATACAAAATCCTCTAGAATGA 921 0.5418 MVPNKKHKTIAPTPPSNEVIDVEAFVLTPISHKGTNNSAPISVEQYALDRDLHRAIAASLGLPTNANNNLIYLSDEENEDVTILTSKPQHTPFGPRKRKNRERGESSNSAQPFDCEICTETKTKKDSFGITGCSHSYCIDCVVMYVASKLQENVMNIQCPVPGCAGLLEPESCREILPEEVFDRWGKALCEAVIVAEERFYCPFKDCSALMIDDGGEVVRESECPNCRRLFCAQCKVPWHDGIECEEFQKLNKDEREKEDIMLMKLAESKKWRRCPKCRFYVEKSQGCMYMRCRSGFQFLIQNPLE* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1628 306 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 20 299 - -
Dod03g1628 306 SMART ibrneu5 183 245 IPR002867 -
Dod03g1628 306 ProSitePatterns Zinc finger RING-type signature. 133 142 IPR017907 -
Dod03g1628 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 197 IPR013083 -
Dod03g1628 306 SUPERFAMILY RING/U-box 189 250 - -
Dod03g1628 306 Gene3D - 242 300 - -
Dod03g1628 306 Pfam Zinc finger, C3HC4 type (RING finger) 115 160 IPR018957 GO:0046872
Dod03g1628 306 ProSiteProfiles TRIAD supradomain profile. 111 306 IPR044066 -
Dod03g1628 306 ProSiteProfiles Zinc finger RING-type profile. 115 161 IPR001841 -
Dod03g1628 306 SUPERFAMILY RING/U-box 110 192 - -
Dod03g1628 306 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 20 299 IPR031127 GO:0004842|GO:0016567
Dod03g1628 306 SUPERFAMILY RING/U-box 256 293 - -
Dod03g1628 306 Pfam IBR domain, a half RING-finger domain 193 245 IPR002867 -
Dod03g1628 306 MobiDBLite consensus disorder prediction 83 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1628 Dod-Chr3 22609388 22612657 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1628 115 294 C3H Transcription Factor Family AT2G19610 29.630 9.97e-21 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1628 K11975 - twl:120005643 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1628 03 22609388 22612657 Dod03g1628 03 22609388 22612657 ECH