Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1607 ATGGGAATGAAGAAGAGTGAGAGAGCTGGCAAGCAAGTGATGGAAAACAAGAAGAATGAGAAGAAGGATGTTGGCAATGCAACCAACCATGAAACCAAAGGAAAAGACAACGTTTTTGCTTCTTGCTCCTTCTCCAGCCTTGGCCTCCACCCTACCTTATGCAATGAATTGCATGAAAGATTGGGATTCGAAGTTCCAACATTGGTGCAAGCTCAAGCCATTCCTGTTATTCTCTCTGGTCACCATGCACTCGTTAATGCTGCCACAGGCACGGGGAAGACAATTGCATACTTAGCTCCAATTATTCACCACTTGCAGAATTATGATACTCAAATCCAACGCTCTGATGGAACATTTGCGTTGGTTCTTGTACCAACGCGTGAGCTATGTTTGCAGGTTTATGAAATTCTTCAGAAGCTATTGCATCGGTTTCATTGGATTGTTCCCGGGTACATTATGGGTGGTGAAAATAGATCAAAGGAGAAAGCCAGGCTACGGAAAGGCATATCAATTCTTATAGCGACTCCTGGGCGCCTTTTAGATCACTTGAAGAATACATCGTCTTTCTTATACACAAATTTGCGCTGGGTAATTTTTGATGAAGCTGATCGGATTTTGGAATTAGGATTTGGGAAAGATATACAGGAAATACTTGATCTTTTAGGTTCAAAGAAAACAGGATATAACCAGGAGAGTGCAGTTCCAAGAAACTCTAAAATTCAAAGACAGAATTTGCTTTTGTCTGCAACCTTAAATGAGAAAGTGAACCACCTTGCTAAAATGAGTCTAGACAATCCTGTGATGATTGGTCTTGAAGGTAAAACAATACAACCAGTTTCAACAATTCAAAGCCTTGATCCTTCAGAATCTGATGGAGACAATGTAGACAAGTATTCTAATAAAATACCGACAGTTGGAGATTATAAAGTCCCTACACAGTTGATTCAAAGAAGCGTGAAAGTGCCTTGTGGTTCACGGCTTCCTGTACTTCTTTCAATTCTAAAGCATCTGTTTGAAAGGGAAACTTCACAAAAGGTTGTGGTATTCTTTTCAACATGTGATGCAGTAGACTTTCACTATTCACTTTTAAGCGAATTCCACTTCTCTGCCTATCCTCAAACAGAAGAAGGGTTCAGACAGATGTTTCTTGGATGCAAAACTTTACGGTTGCATGGTAATATGGAACAGGAGGACCGGAGAACCACTTTTCAGGCCTTTAAAACTGAACATTCTGCTTTGCTTTTATCCACTGATGTTTCTGCTAGAGGCCTGGATTTTCCAAAGGTTCGATGCATCATACAATATGATTCTCCTGGGGAAGCTACTGAATATGTGCATAGAGTTGGTAGGACTGCTCGTCTGGGTGAAAGAGGAGAGTCATTGTTATTTCTGCAGCCAGTTGAAATAGACTATTTACAGGACTTGGAGAAACATGGTGTCTCACTAACAGAGTATCCTCTCATCAAAGTGTTGGATAATTTCCCACTACATGGACAAAAGAACCACATGAAGAAGTCCATTTTTGTAGACTCACATCCCTGGGTCCTTTGTCTCCAAAAGGCACTTGAATCCTTCATTATGTCCAAGCCCAAGATTGATGAACTTGCCAAGAAGGGATTTTGCTCTTGGGTTCGTGCATACGCTGCCCATCGTGGCGAGCTGAAAAGAATATTTATGATCAAGAAACTTCACCTAGGCCACGTAGCAAAAAGCTTTGCATTGAAACAACAACCCTCCTTAGTTGGGCAGTCCTTCCAAAAGCAAGCTAAGAAGAGAAAGAGATATGAGAAGAAAAGTGGACTGTCGAAAAAGAGAAAAGTTGCCAGTGTGACGTAA 1836 0.4112 MGMKKSERAGKQVMENKKNEKKDVGNATNHETKGKDNVFASCSFSSLGLHPTLCNELHERLGFEVPTLVQAQAIPVILSGHHALVNAATGTGKTIAYLAPIIHHLQNYDTQIQRSDGTFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLDHLKNTSSFLYTNLRWVIFDEADRILELGFGKDIQEILDLLGSKKTGYNQESAVPRNSKIQRQNLLLSATLNEKVNHLAKMSLDNPVMIGLEGKTIQPVSTIQSLDPSESDGDNVDKYSNKIPTVGDYKVPTQLIQRSVKVPCGSRLPVLLSILKHLFERETSQKVVVFFSTCDAVDFHYSLLSEFHFSAYPQTEEGFRQMFLGCKTLRLHGNMEQEDRRTTFQAFKTEHSALLLSTDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPVEIDYLQDLEKHGVSLTEYPLIKVLDNFPLHGQKNHMKKSIFVDSHPWVLCLQKALESFIMSKPKIDELAKKGFCSWVRAYAAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQAKKRKRYEKKSGLSKKRKVASVT* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1607 611 CDD DEADc_DDX31 57 270 - -
Dod03g1607 611 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 74 269 IPR014001 -
Dod03g1607 611 MobiDBLite consensus disorder prediction 1 30 - -
Dod03g1607 611 Gene3D - 325 607 IPR027417 -
Dod03g1607 611 MobiDBLite consensus disorder prediction 583 611 - -
Dod03g1607 611 Pfam DEAD/DEAH box helicase 68 257 IPR011545 GO:0003676|GO:0005524
Dod03g1607 611 PANTHER ATP-DEPENDENT RNA HELICASE DDX31-RELATED 25 609 - -
Dod03g1607 611 SMART DUF4217_3 517 582 IPR025313 -
Dod03g1607 611 Pfam Helicase conserved C-terminal domain 332 455 IPR001650 -
Dod03g1607 611 SMART helicmild6 372 455 IPR001650 -
Dod03g1607 611 CDD SF2_C_DEAD 314 464 - -
Dod03g1607 611 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 198 206 IPR000629 -
Dod03g1607 611 SMART ultradead3 62 285 IPR014001 -
Dod03g1607 611 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 42 71 IPR014014 GO:0003724
Dod03g1607 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 269 IPR027417 -
Dod03g1607 611 MobiDBLite consensus disorder prediction 1 32 - -
Dod03g1607 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 502 IPR027417 -
Dod03g1607 611 MobiDBLite consensus disorder prediction 587 601 - -
Dod03g1607 611 Gene3D - 4 272 IPR027417 -
Dod03g1607 611 Pfam Domain of unknown function (DUF4217) 519 579 IPR025313 -
Dod03g1607 611 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 333 502 IPR001650 -
Dod03g1607 611 PANTHER RNA HELICASE 25 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1607 Dod-Chr3 22115100 22122921 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1607 36 487 Eukaryotic Initiation Factors Gene Family AT3G19760 24.670 2.49e-34 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1607 K14806 - gmx:100805157 988.793