Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1606 ATGGTCGTGATGAAGGCTCCTTCCAATGGTTACTTGCCTAATTCAGGCGAAGGAGAAAGGAAGACAATCAATTCTGAGTTATGGCATGCTTGTGCGGGGCCTTTGGTTTCTTTGCCTCCCGCTGGAAGTTTGGTGGTTTACTTCCCTCAAGGACACAGTGAACAAGTTGCAGCATCTATGCAAAAGGAGGCAGACTTCATACCCAGCTATCCTAACCTTCCATCCAAATTGATTTGCATGCTTCACAATGTTGCCCTGCATGCTGATCCTGAAACGGACGAGGTCTATGCTCAAATGACTCTTCAACCTGTAAATAAATATGACAAGGAAGCAATGCTGGCATCAGACATGGGTCTCAAGCAAAGCCAACAACCTACTGAATTCTTTTGCAAAACTCTTACAGCTAGCGACACAAGCACGCACGGTGGATTTTCTGTGCCTCGTAGAGCAGCCGAGAAAATATTCCCACCTCTGGATTTTTCAATGCAACCTCCTGCTCAGGAGATTGTTGCCAAGGATTTGCACGATAATACATGGACATTTAGACACATTTACCGCGGACAACCAAAGAGGCATCTATTGACAACTGGTTGGAGTGTCTTTGTTAGCACAAAAAGACTGTTTGCTGGGGATTCTGTTCTTTTTATCAGAGATGAAAAACAGCAACTTCTTCTAGGTATAAAGCACGCTAATAGACAGCAGCCAGCACTCTCTTCATCAGTAATATCCAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCAGCTCATGCTGCTTCAAATAATAGCCCATTTACCATATTTTATAATCCAAGGGCCAGCCCCTCTGAATTTGTGATTCCATTGGCCAAGCATAATAAGGCCATGTACACTCAAGTTTCCCTTGGAATGAGATTTAGAATGATGTTTGAGACTGAGGAGTCAGGAGTACGCAGATACATGGGTACAATCACTGGGATCAGTGACTTGGATCCTGTCCGATGGAAAAATTCACAGTGGCGCAATCTTCAGGTTGGTTGGGATGAATCAACAGCTGGTGAGCGCCCAGGCAGAGTTTCGACTTGGGATATTGAACCAGTAGTGACTCCTTTCTACATTTGTCCACCTCCATTTTTCAGGCCCAAGTTCCCAAAGCTACCAGGAATGCCGGAAGATGAGTCTGATATAGAAAATGCTTTCAAGAGAGCTGTGCCTTGGATTGGAGATGACCTCGGCATGAAGGATGCCTCAACCTCAATATTTCCTGGTTTGAGTTTAGTGCAATGGATGAGCATGCAGCAGAACAATCAGTTCTCTGCTACTCAATCTGGTTTTATCCCCCCATCCATGCTTTCATCTAATACCCTGCATGGTAACCTTAATGATCATTCATCCAAGATATTGAACTTCCAAGCCCCCGTCATCTCTGCACCAAGTCTTCAGTTTAACAAACCTAATTTACCAAACCAAGTCAACCAATTGCAACAGTCTCCAACATCATGGCCTCAGCAGCAGCAGCAGCAGCAACAGCAGCAGAAGCTTCAGTCATTGTTGCAATCGCCGATAAACCAGCTCCAGCAGCAACAGCAGCAGCAGAGGCAACAGCAGCTGCCTGAACCACAAAACCTGCCACATCCACAGCAACAACAGCCCCAACAGACTCAACAGAGAGCACAACAGCTGCAACAACAGTCATGTCAACAGGCTGTTGTGAATAATGGGGTAGTTACTTCTAATCAGGTTTCAAATCAGTGTGCACAACAACCGGTAACCTACTCTCAGCTTCAGCAACAGCAATTAATCTCAGGTAGTATGGCACCCCAGCAAAGTATCCAACCAGGCGGCAAGAATACATTGCTAATGGCATCCTTACCACAAGACTCACAATTTCAGCAACAGATAGACCAGCAAGCTAGCCTCATACAGAGGCAGCAGCAACAGACACAGTTGCAGCAATCTCCATTGCAGTTCTTGCAACAAAGTGTATCACAAAGGGCGCCCCAGCAACCACCAGAGACGCAAATGACACAGCAAAACCCCTCAGAGCAACAACTACAGTTACAATTGCTGCAGAAACTGCAGCAGCAGCAACAGCAGCAACTTCTTTCCACGTCTAGCCCACTTTTGCAGTCTCAGGTTCTACAGCAACAAAATGCTCATCAACAAAACCAGCAATTAACGCAGCTGCCTCAATCACAGCATCAACCTCAACAGCTTGTCAATAATGCATTCTCAATGGATAAGCTTCTCAGCAGCAACAACTTCTCTTCTTCAGCTCTGATGCAATCGCAACAGCTTCCTGTGAACCAACCACAGAGTACACAGAAATCACTTACAACTACCAGAGCCCCGTCTAGTCTTACAGATGTAGATGCACCATCATGCTCAACTTCACCGTCTACTAATACCTGCCAGATATCCCCCTCAAACCTCCTGAAAAGAAATCAACAAGTGCCTGCTACATTAGGGGGGATCTCAGTAGTTGAACCGACTAATAATCTGGTACGTGAGCTTCAGAGTAAGTCTGACATGCAGATCAAACATGAGGTACCAAGTGTAAAAGGACCTGACCAGCTAAAGTATAAAGGGACAATCAGTGATCAGCTGGAAGCTTCTTCTTCCGGAACATCTTACTGTATCGATCCTGGTAACATCCACCAGAACTTCCAACTTCCTAACTTCTGCATGGATGGGGATGTCCAATCACACCCTGGACCCAGTCTACCATTTGCCTCCAATCTTGATGGATTAACACCAGATACAATGCTCTCAAGGGGCTATGACTCACCGAAAGATCTCCAAAACTTGCTGCCTAATTATGGTGGTGCTCCAAGAGACATTGAAACTGAGCTGTCTGCTGCAGCCATCAGTTCACAGTCATTTGGGGTGCCAAACATGCCTTTTAAGCCTGGTTGCTCAAGTGATATTGCCATGAATGATACTGGGGTTTTGAATAATGGTTTATGGGCTAACCAATCTCAACGAATGCGAACATACACTAAGGTTCAAAAATGTGGCTCTGTTGGACGATGTATTGATGTCACCCGTTACAAAGGATACGATGGCCTCCGCCATGATTTGGCTCGTATGTTTGGGATTGAAGGGCAGTTAGAAGATCCTCAAAGGACGGAGTGGAAACTAGTATATGTGGATCATGAAAATGACATTCTCCTTGTTGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTTCAGAGCATAAAGATATTGTCATCTGCTGAGGTGCAGCAAATGAGCTTGGATGGGGATCTAGGCCAAGTTCCGATCGCCAATCAAGCTTGTAGTGGGACAGAAGGTGGCAATGCATGGAGGGGACAGTATGATGATAACTCTGCCGCCTCGTTCAACCGATGA 3354 0.4568 MVVMKAPSNGYLPNSGEGERKTINSELWHACAGPLVSLPPAGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAMLASDMGLKQSQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKHANRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPLAKHNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPGRVSTWDIEPVVTPFYICPPPFFRPKFPKLPGMPEDESDIENAFKRAVPWIGDDLGMKDASTSIFPGLSLVQWMSMQQNNQFSATQSGFIPPSMLSSNTLHGNLNDHSSKILNFQAPVISAPSLQFNKPNLPNQVNQLQQSPTSWPQQQQQQQQQQKLQSLLQSPINQLQQQQQQQRQQQLPEPQNLPHPQQQQPQQTQQRAQQLQQQSCQQAVVNNGVVTSNQVSNQCAQQPVTYSQLQQQQLISGSMAPQQSIQPGGKNTLLMASLPQDSQFQQQIDQQASLIQRQQQQTQLQQSPLQFLQQSVSQRAPQQPPETQMTQQNPSEQQLQLQLLQKLQQQQQQQLLSTSSPLLQSQVLQQQNAHQQNQQLTQLPQSQHQPQQLVNNAFSMDKLLSSNNFSSSALMQSQQLPVNQPQSTQKSLTTTRAPSSLTDVDAPSCSTSPSTNTCQISPSNLLKRNQQVPATLGGISVVEPTNNLVRELQSKSDMQIKHEVPSVKGPDQLKYKGTISDQLEASSSGTSYCIDPGNIHQNFQLPNFCMDGDVQSHPGPSLPFASNLDGLTPDTMLSRGYDSPKDLQNLLPNYGGAPRDIETELSAAAISSQSFGVPNMPFKPGCSSDIAMNDTGVLNNGLWANQSQRMRTYTKVQKCGSVGRCIDVTRYKGYDGLRHDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGQVPIANQACSGTEGGNAWRGQYDDNSAASFNR* 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1606 1117 MobiDBLite consensus disorder prediction 474 549 - -
Dod03g1606 1117 ProSiteProfiles PB1 domain profile. 990 1083 IPR000270 GO:0005515
Dod03g1606 1117 SMART B3_2 129 231 IPR003340 GO:0003677
Dod03g1606 1117 Pfam Auxin response factor 255 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dod03g1606 1117 Pfam B3 DNA binding domain 129 227 IPR003340 GO:0003677
Dod03g1606 1117 MobiDBLite consensus disorder prediction 652 676 - -
Dod03g1606 1117 MobiDBLite consensus disorder prediction 753 800 - -
Dod03g1606 1117 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 4 1104 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dod03g1606 1117 Gene3D - 985 1079 - -
Dod03g1606 1117 Pfam AUX/IAA family 988 1076 IPR033389 -
Dod03g1606 1117 Gene3D - 126 230 IPR015300 -
Dod03g1606 1117 PANTHER AUXIN RESPONSE FACTOR 19 4 1104 - -
Dod03g1606 1117 SUPERFAMILY DNA-binding pseudobarrel domain 119 258 IPR015300 -
Dod03g1606 1117 CDD B3_DNA 128 220 IPR003340 GO:0003677
Dod03g1606 1117 Gene3D - 292 363 - -
Dod03g1606 1117 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Dod03g1606 1117 SUPERFAMILY CAD & PB1 domains 1003 1068 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1606 Dod-Chr3 22062923 22071662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1606 4 490 B3 DNA Binding Superfamily AT1G19220 80.082 0.0 818
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dod03g1606 AUX_IAA 1.1e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1606 K14486 - gmx:100804628 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1606 03 22062923 22071662 Dod03g1606 03 22062923 22071662 ECH
Dod05g2435 05 50621572 50627633 Dod03g1606 03 22062923 22071662 PCT