Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1605 ATGGCCACCAGCAGCGCTCAGCTCACAGCATCCTCAATTTCCGCGAGGAGCGTGTCGTCGTTCGAAGGGCTTCGACCTTGCGCTGTTCAGTTCCCATGCGTCAGAATTGGCAGCCTCTCACAATCACAGAGGTCCTTTCGGGGTCTCGTTGTCAAAGCCGCCACTGTTGTTGCCCCTAAGTACACTGCCATTAAGCCTTTGGGCGACAGAGTACTGTTGAAGATTAAGGAAGCTGAAGAGAAGACCGACGGAGGGATTTTGCTTCCCTCAACTGCTCAAACAAAGCCACAGGGGGGTGAGGTGGTTGCTGTTGGAGAAGGGAAGACAGTTGGAAACAGCAAGGTGGAAATTAGTGTGAAGACTGGTGCACAAGTCGTCTATTCAAAGTATGCAGGAACTGAGGTAGAGTTCAATGGTACAAAGCATCTTATACTGAAGGATGATGACATTGTTGGTATCCTTGTAACTGAAGAGATCAAAGATCTTAAACCCCTGAACGATAGAGTCTTAATACAGGTTGAACAAGCTGAGGAAACAACTGCTGGTGGCTTGTTGCTTACACAAGCAACCAAGGAGAAACCTTCTATTGGAACAGTGATAGCAGTTGGTCCAGGGCCTCTTGATGAGGAAGGTAACAGAAAACCTTTGTCTGTTGCTCCTGGAAACACGGTTTTGTACTCCAAGTACGCTGGGAACGACTTCAAGGGTAAAGATGGTTCTGACTACATTGCCTTGAGGGCCTCGGATATCATGGCTGTCCTTTCCTAG 768 0.4844 MATSSAQLTASSISARSVSSFEGLRPCAVQFPCVRIGSLSQSQRSFRGLVVKAATVVAPKYTAIKPLGDRVLLKIKEAEEKTDGGILLPSTAQTKPQGGEVVAVGEGKTVGNSKVEISVKTGAQVVYSKYAGTEVEFNGTKHLILKDDDIVGILVTEEIKDLKPLNDRVLIQVEQAEETTAGGLLLTQATKEKPSIGTVIAVGPGPLDEEGNRKPLSVAPGNTVLYSKYAGNDFKGKDGSDYIALRASDIMAVLS* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1605 255 SUPERFAMILY GroES-like 62 154 IPR011032 -
Dod03g1605 255 Hamap Co-chaperonin GroES [groES]. 161 255 IPR020818 GO:0005524|GO:0006457|GO:0140662
Dod03g1605 255 CDD cpn10 162 254 IPR020818 GO:0005524|GO:0006457|GO:0140662
Dod03g1605 255 PIRSF Cpn21 1 255 IPR017416 GO:0006457|GO:0046914|GO:1901671
Dod03g1605 255 PANTHER GROES CHAPERONIN 5 255 - -
Dod03g1605 255 SUPERFAMILY GroES-like 161 254 IPR011032 -
Dod03g1605 255 SMART Cpn10_2 63 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
Dod03g1605 255 SMART Cpn10_2 161 254 IPR020818 GO:0005524|GO:0006457|GO:0140662
Dod03g1605 255 ProSitePatterns Chaperonins cpn10 signature. 64 88 IPR018369 GO:0005524|GO:0006457
Dod03g1605 255 Gene3D GroES chaperonin 157 255 IPR037124 GO:0006457
Dod03g1605 255 Gene3D GroES chaperonin 56 156 IPR037124 GO:0006457
Dod03g1605 255 ProSitePatterns Chaperonins cpn10 signature. 162 186 IPR018369 GO:0005524|GO:0006457
Dod03g1605 255 Pfam Chaperonin 10 Kd subunit 64 153 IPR020818 GO:0005524|GO:0006457|GO:0140662
Dod03g1605 255 Pfam Chaperonin 10 Kd subunit 162 253 IPR020818 GO:0005524|GO:0006457|GO:0140662
Dod03g1605 255 PRINTS 10kDa chaperonin signature 120 132 IPR020818 GO:0005524|GO:0006457|GO:0140662
Dod03g1605 255 PRINTS 10kDa chaperonin signature 86 107 IPR020818 GO:0005524|GO:0006457|GO:0140662
Dod03g1605 255 PRINTS 10kDa chaperonin signature 64 79 IPR020818 GO:0005524|GO:0006457|GO:0140662
Dod03g1605 255 PRINTS 10kDa chaperonin signature 141 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
Dod03g1605 255 Hamap Co-chaperonin GroES [groES]. 63 155 IPR020818 GO:0005524|GO:0006457|GO:0140662
Dod03g1605 255 CDD cpn10 64 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
Dod03g1605 255 PANTHER 10 KDA HEAT SHOCK PROTEIN 5 255 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1605 Dod-Chr3 22057039 22060508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1605 4 255 Calmodulin-binding Proteins AT5G20720 75.197 1.87e-135 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1605 K04078 - gmx:100814751 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1605 03 22057039 22060508 Dod03g1605 03 22057039 22060508 ECH
Dod05g2434 05 50617884 50620182 Dod03g1605 03 22057039 22060508 PCT