Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1604 ATGGTGAAGCCGAACGTGGAAAAGCCTGCGGCGGAGCGAAGTGATTCGAAGTTCAAGGGTGTGAGGAAGAGGAACTGGGGAAAATTTGTGTCGGAAATCAGGCTTCCCAATAGCCGCCAGAGGATTTGGTTGGGTTCCTACGACACCGCCGAGAAGGCGGCGCGTGCCTTCGACGCCGCCACGTTCTGCTTACGTGGGCCAACTGCCAAGTTCAATTTCCCCGGCGATCCACCGGTGATCGCCGGTGGCCGGTCCATGAACTCCTCCCAAATCCAGATCGCCGCCGCCCAGTACGCCAATTCGGAGCCCCAGGGGGAACATTTGGGTCAACCCGTTTTCGATTCTTCTTTGATGTCAGAGGAAGAGACAGTGGCGACAGTGTCGATGGAAACACTGTCATCGTCGCCTTTGCTCTCCGTCTCCAACACAACGGTCCAAACGGACAGTGAAGTCACAACAACGGACTCGATATCGGACCTTCTTGAGACAATCGGGTCGGGTAATTTTGAACCAGATTACTTCTTTTCGGGTTTGGATGATTTTGGTGGCAATTTCTACATGCCAGAGATGCCAAGTTTTGATTATGGAGAAGAGAACTTGGAAGGGTTGATAATTGAGGACTCTTTCTTGTGGAATTTCTAA 642 0.5218 MVKPNVEKPAAERSDSKFKGVRKRNWGKFVSEIRLPNSRQRIWLGSYDTAEKAARAFDAATFCLRGPTAKFNFPGDPPVIAGGRSMNSSQIQIAAAQYANSEPQGEHLGQPVFDSSLMSEEETVATVSMETLSSSPLLSVSNTTVQTDSEVTTTDSISDLLETIGSGNFEPDYFFSGLDDFGGNFYMPEMPSFDYGEENLEGLIIEDSFLWNF* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1604 213 Pfam AP2 domain 16 66 IPR001471 GO:0003700|GO:0006355
Dod03g1604 213 Gene3D AP2/ERF domain 16 75 IPR036955 GO:0003700|GO:0006355
Dod03g1604 213 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Dod03g1604 213 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 3 213 - -
Dod03g1604 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 213 - -
Dod03g1604 213 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Dod03g1604 213 CDD AP2 16 74 IPR001471 GO:0003700|GO:0006355
Dod03g1604 213 SUPERFAMILY DNA-binding domain 16 74 IPR016177 GO:0003677
Dod03g1604 213 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Dod03g1604 213 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1604 Dod-Chr3 22009013 22010102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1604 16 213 AP2-EREBP Transcription Factor Family AT1G19210 46.569 2.16e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod03g1604 AP2 2.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1604 - - gmx:100802508 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1604 03 22009013 22010102 Dod03g1604 03 22009013 22010102 ECH