Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1589 ATGCAAAGGAAATCGCCGTTGCCGTTGAGCGAAGCAAAAAGCGGCAATGCGAACAAGAAGAAGGTTCTGTGTGGCGAGGAAGCGTTGGTGAAGCTTCTGAGATGGCATTTCGGGTACCCTGATTTCAGGGGCAAGCAATTGGACGCTATTCAGGCCGTGCTCTCAGGAAGAGATTGTTTTTGCCTTATGCCAACTGGAGGAGGCAAGTCAATGTGTTATCAGATCCCTGCACTGGCCAAAACAGGAATTGTGCTTGTTGTTTGTCCTTTAATAGGTTTTGGCTCATTTGTTCTTTCCTTAAGTCAGGAAAACCAAGTAATGGCCCTAAAGGAGAAAGGCATTGCTGCAGAATTTCTCTCCTCAACAAAAACAGCTGATGCGAAAAATAAGATTCACGAGGATCTTGATTCTGGAAAACCCTCCACAAGGCTGCTATATGTGACTCCAGAGTTGATAGCAACAGCTGGGTTTATGTCGAAGCTGACAAAGATTTATGCTAGGGGGTTGTTATGTCTCATTGCCATAGATGAGGCACATTGCATCTCAACTTGGGGTCATGATTTCAGACCTAGCTACCGGAAGCTTTCATCATTGAGATGCCACCTACCAGATGTACTGATATTAGCTCTGACTGCCACTGCTGTTCCTAAGGTTCAGAAGGATTTGGTAGAGTCCTTACATATGCAAAATCCATTAATACTTAAATCTTCTTTTAATCGTCCCAATATATACTATGAAGTTCGATACAAAGATCTTTTGGATGATGCTTATTCTGATTTATCCAATACACTCAAGTCTAAGGGAGATGTTTGTGCAATAGTTTACTGCCTTGAACGTTCAATGTGTGATGAGTTGTCTGCTCATCTATCCCAAAACGGCATTTCCTGTGCTGCTTATCATGCAGGTTTGAATAAGAACGTCCGGACCTCTGTGTTAGATGATTGGATTTCTTCTAAGATACAAGTTGTTGTTGCCACGGTTGCTTTTGGAATGGGCATTGATAGAAAGGATGTCAGAATTGTATGCCACTTCAATATTCCCAAGTCAATGGAAGCATTTTATCAAGAGTCGGGCAGAGCAGGTCGTGATCAATTGCCCTGTACAAGTCTGCTGTACTATGGAGTAGATGATCGCAAACGAATGGAATTTATATTAAGCAACTCTGGAAGCAAGAAGGTTCAGTCATCAAGTTCACGAGATGAATCATCCAAAAGGTCACTGACTGACTTCAATCAGATGGTTAAATATTGTGAAGGATCTGGGTGTCGTAGGAAAAGGATTCTTGAGAGCTTTGAGGAGCAGGTTACTGCATCACTTTGTGGAAAAACATGTGATGCCTGCAAACATCCAAACTTAGTTGCCAGATATTTGGAGGACCTGACAACTGCCATTGCTTTACGGCAGAAAAGTGGTTCTTCTCGAGTTTTCATCACCAGTTCTACTGAGACAATTGGCAGAGATTCTGAATTCTGGAGTCGTGATGACGAAGAAAGTGGATCAGAGGAAGATATATCTGACTCAGATGATGGTAATGAGGGTATCAACAACATTACCAGGTCGAAGCTTCGGTCTAGACTGGGAGTCAACGAAAAGCTTGCTTTGTTACAACGTGCAGAAGAAAACTTCTATCAAAACGAGAACACTGTTAAACAGAGCAAAGTTGACAAGAATGCTATTTCTGATACAATGCGAGGAGCAAGCAGGAAAAGATTACAAAATGCTGTAAAACAGGCTCAGCAACGACTTGATGACTTGAAGATTGACATGGAAACATCAGCATCTTTCCTTGAAGATGAATGCTACAAGAAATATGGCAAGGCTGGCAAATCCTTCTATTATTCACAAGTGGCAAGCACAGTGAGGTGGCTAACAACTGCAAGTTCCGTTGATCTGATGAGCCGGCTTGGTGCAATGGAGGCATCCCCATCAATGAAGGTTGTGTCTGAAGCTGAACATCCCCTCACCCTGCGGCATGCTTTTGATACTTGTGCAAAAGAAGATACAAGCGATGAAGTCTCAGGCAATGCTAGACCAGAAAATTCCCCATGTGGTGGCAGCGGTGTGCCAAAAGAAAGTTCTTCCTTTAATACAGAGTTGCCACAAATACCATCCTTCTCTGAATTCGTTAATAGCAGGAAAGCAAAAGGTCACCAATTAAGCGACACTAAAAAACATTCATCAAGAGTAGAAAAGAAGATGCGGGTAGAGTAG 2211 0.4265 MQRKSPLPLSEAKSGNANKKKVLCGEEALVKLLRWHFGYPDFRGKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKTGIVLVVCPLIGFGSFVLSLSQENQVMALKEKGIAAEFLSSTKTADAKNKIHEDLDSGKPSTRLLYVTPELIATAGFMSKLTKIYARGLLCLIAIDEAHCISTWGHDFRPSYRKLSSLRCHLPDVLILALTATAVPKVQKDLVESLHMQNPLILKSSFNRPNIYYEVRYKDLLDDAYSDLSNTLKSKGDVCAIVYCLERSMCDELSAHLSQNGISCAAYHAGLNKNVRTSVLDDWISSKIQVVVATVAFGMGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPCTSLLYYGVDDRKRMEFILSNSGSKKVQSSSSRDESSKRSLTDFNQMVKYCEGSGCRRKRILESFEEQVTASLCGKTCDACKHPNLVARYLEDLTTAIALRQKSGSSRVFITSSTETIGRDSEFWSRDDEESGSEEDISDSDDGNEGINNITRSKLRSRLGVNEKLALLQRAEENFYQNENTVKQSKVDKNAISDTMRGASRKRLQNAVKQAQQRLDDLKIDMETSASFLEDECYKKYGKAGKSFYYSQVASTVRWLTTASSVDLMSRLGAMEASPSMKVVSEAEHPLTLRHAFDTCAKEDTSDEVSGNARPENSPCGGSGVPKESSSFNTELPQIPSFSEFVNSRKAKGHQLSDTKKHSSRVEKKMRVE* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1589 736 CDD SF2_C_RecQ 240 373 - -
Dod03g1589 736 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 404 IPR001650 -
Dod03g1589 736 Coils Coil 568 588 - -
Dod03g1589 736 Gene3D - 8 239 IPR027417 -
Dod03g1589 736 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 32 451 IPR004589 GO:0004386|GO:0006310
Dod03g1589 736 Pfam Helicase conserved C-terminal domain 260 362 IPR001650 -
Dod03g1589 736 MobiDBLite consensus disorder prediction 487 516 - -
Dod03g1589 736 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 238 466 IPR027417 -
Dod03g1589 736 Gene3D - 240 465 IPR027417 -
Dod03g1589 736 MobiDBLite consensus disorder prediction 714 736 - -
Dod03g1589 736 SMART helicmild6 283 364 IPR001650 -
Dod03g1589 736 Pfam DEAD/DEAH box helicase 46 219 IPR011545 GO:0003676|GO:0005524
Dod03g1589 736 CDD DEXHc_RecQ 31 239 - -
Dod03g1589 736 MobiDBLite consensus disorder prediction 494 509 - -
Dod03g1589 736 MobiDBLite consensus disorder prediction 674 713 - -
Dod03g1589 736 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 233 IPR027417 -
Dod03g1589 736 PANTHER DNA HELICASE RECQ FAMILY MEMBER 4 720 - -
Dod03g1589 736 MobiDBLite consensus disorder prediction 666 736 - -
Dod03g1589 736 Pfam RecQ zinc-binding 377 448 IPR032284 -
Dod03g1589 736 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 3 4 720 - -
Dod03g1589 736 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 50 232 IPR014001 -
Dod03g1589 736 SMART ultradead3 38 248 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1589 Dod-Chr3 21747412 21755800 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1589 35 362 Eukaryotic Initiation Factors Gene Family AT3G19760 22.222 1.34e-11 65.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1589 03 21747412 21755800 Dod03g1589 03 21747412 21755800 ECH