Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1557 ATGTCGGTTAATCTGACGGCAAACGCGATTCCGTCGATAATCGACGGCGACGTGAACTCGAAGCCGCTGGTTCAGGTTCTCGATTTGGCGTTGATCTCAAGTGGTAACAGCAACAACTCGCAGCAGAGGTACCGTTTGTTGCTGTCCGACGCCGTTTCATCTCACCATGCGATGCTTGCGACTCAGCTCAACGACCGAGTCCGAACCGGCCGAGTCAAGAAAGGCTCCGTTGTTCAGCTCCTCGAGTACATTTGCACTCCTCTCCACAATCGCAAGGTTATTGTAGTGCTCAACATGGAAACTATAATACTACATTGCAAGATCATTGGGAATCCAAAGCTGTTTGGGGAATCCAATTTACCAACTCAGAGAGCATTACCTGATAGCATTGCGCAGAACTCATCCAGGGGTAATAGTAATCAACCGGCTGCTAAAAAAACAAGTGATAATGCGCAGAATTTCCAGCCCACGGTTCAACCTCCTTACCAACCACCTCCAGTTTACAAAAGTCGTGGTGCAATTGTGAAAAATGAGGCACCGGCACGCATTATTCCTATAGCAGCTTTAAATCCTTATCAAGGTCGGTGGGCCATCAAGGCAAGGATAACTGCAAAAGGGGATCTGCGTCGCTATAATAATGCTCGCGGAGATGGGAAAGTCTTTTCATTTGATCTCCTTGATTCTGATGGAGGTGAAATAAGAGTAACATGCTTTAATGCTGTGGTTGATCGATTCTACAATGTAATTGAGGTTGGTAAAGTTTGCTTGATATCCAAAGGTAGCTTGAAACCTGCACAGAAGAATTTCAACCATCTGAAGAATGAATGGGAAATTGTTCTGGATTTAAATTCTACTGTTGAACTTTGCTCAGATGAAGACGACTCTATACCTAGACAACAATTCTCCTTCAGGCCTATCAGTGACATTGAAAATGTCGACAGTAACTCCATCCTTGATGTTATTGGGGTTGTGATATCTGTGAATCCTTCTGTTCCCATCTTGAGGAAGAATGGAATGGAAACTCAACGAAGAATTTTGAATCTAAAGGATGAGTCTGGCAGGAGTGTTGAGCTAACCCTTTGGGGAGAATTCTGCAATAGGGAAGGACAAAAGCTGCAAGAGATGGTCGATGCTGAGTCTTTCCCCGTTTTGGCAGTCAAAGCTGGGAAGGTTAGTGATTTTAGTGGAAAGTCTATTGGGACTATTTCTACTACACAGCTTTTCATAAACCCAGATTTTCCTGAGGCTCATACCCTAAGGGACTGGTTTGATATAGTAGGAAAAGATTCAGCTTCTCTATCCATTTCTAAGGACATTATGCCAGGAGGGCCAAAGAATGAGATACGTAAAACTGTGTCTCAGATCAAGGATGAAGGTCTGGGGCGATCAGATAAGCCAGATTGGATAACAGTGCGGGCAACCATATCATTCATCAAGACAGATACCTTTTGTTACACAGCTTGCCCTCTGATGATTGGAGATCGACAGTGCAACAAGAAAGTTACTAGGTCAGGAAACACGAGATGGCAATGTGATAGGTGCAACCAAGAGTTTGAGGAGTGTGATTACCGATACCTTCTTCAAGCTCAAATTCTGGATCATACAGGAATAACTTGGGTGACTGCTTTTCAGGAATCAGGGGAAGAGATTATGGGGTACCCAGCAAAGGAGCTGTACTTGTTGAAGTATGATGAACAGGATGATGACAGGTTTGGAGAAATAATCAAGAGTAGACTCTTCAACCAGTTTGTGTTTAGGCTGAAAATAAAAGAGGAATTGTATGGCGATGAACAGAGGGTGAAGGTTACAGTAGTCAAGGCAGAAAAAGTGAATTATTCTTCAGAGAGTATATACATTCTTGATTTGATTTCCAAGTTTTGTAGGCAGTAA 1890 0.4333 MSVNLTANAIPSIIDGDVNSKPLVQVLDLALISSGNSNNSQQRYRLLLSDAVSSHHAMLATQLNDRVRTGRVKKGSVVQLLEYICTPLHNRKVIVVLNMETIILHCKIIGNPKLFGESNLPTQRALPDSIAQNSSRGNSNQPAAKKTSDNAQNFQPTVQPPYQPPPVYKSRGAIVKNEAPARIIPIAALNPYQGRWAIKARITAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYNVIEVGKVCLISKGSLKPAQKNFNHLKNEWEIVLDLNSTVELCSDEDDSIPRQQFSFRPISDIENVDSNSILDVIGVVISVNPSVPILRKNGMETQRRILNLKDESGRSVELTLWGEFCNREGQKLQEMVDAESFPVLAVKAGKVSDFSGKSIGTISTTQLFINPDFPEAHTLRDWFDIVGKDSASLSISKDIMPGGPKNEIRKTVSQIKDEGLGRSDKPDWITVRATISFIKTDTFCYTACPLMIGDRQCNKKVTRSGNTRWQCDRCNQEFEECDYRYLLQAQILDHTGITWVTAFQESGEEIMGYPAKELYLLKYDEQDDDRFGEIIKSRLFNQFVFRLKIKEELYGDEQRVKVTVVKAEKVNYSSESIYILDLISKFCRQ* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1557 629 Pfam Replication factor-A C terminal domain 468 616 IPR013955 -
Dod03g1557 629 Pfam Replication protein A OB domain 306 410 IPR031657 -
Dod03g1557 629 PANTHER REPLICATION FACTOR A 1, RFA1 2 623 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Dod03g1557 629 Pfam OB-fold nucleic acid binding domain 197 278 IPR004365 GO:0003676
Dod03g1557 629 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Dod03g1557 629 SUPERFAMILY Nucleic acid-binding proteins 182 296 IPR012340 -
Dod03g1557 629 Gene3D - 181 292 IPR012340 -
Dod03g1557 629 CDD RPA1_DBD_C 452 625 IPR013955 -
Dod03g1557 629 CDD RPA1_DBD_A 185 288 - -
Dod03g1557 629 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 2 623 - -
Dod03g1557 629 Gene3D - 436 627 IPR012340 -
Dod03g1557 629 SUPERFAMILY Nucleic acid-binding proteins 449 626 IPR012340 -
Dod03g1557 629 CDD RPA1N 9 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Dod03g1557 629 SUPERFAMILY Nucleic acid-binding proteins 300 427 IPR012340 -
Dod03g1557 629 MobiDBLite consensus disorder prediction 129 167 - -
Dod03g1557 629 CDD RPA1_DBD_B 317 424 - -
Dod03g1557 629 SUPERFAMILY Nucleic acid-binding proteins 1 111 IPR012340 -
Dod03g1557 629 MobiDBLite consensus disorder prediction 129 157 - -
Dod03g1557 629 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 625 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Dod03g1557 629 Gene3D - 295 432 IPR012340 -
Dod03g1557 629 Gene3D - 3 115 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1557 Dod-Chr3 21218031 21222080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1557 26 625 Core DNA Replication Machinery Family AT2G06510 69.318 0.0 897
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1557 K07466 - gmx:100792409 1038.87