Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1553 ATGGAACTAGAAGAAGAAAAAGTCGAGGCACACAAGAAAGGGACAAAGAATGAGGTTGTCCTTCGAATCTCCGAGAACGAAACTAGTTCCTTTTCTCCCCACATGGCTTCTCCTTCAAAAGGGTACACAGATTCACATGTTGAATTAACAGTGCCTGAGAATCTCAGAGGCAGTGTTGTTCAAGCTTCCACAGAGTTCGTGACATCAACGCCGCGGTTGTTGGGTAGGTCCGACTTCTCGAAGCCAAAGTCCAGGATGGTTGAACCGCCATATCCAAAAGGTGCAACCTTTGTTGAAGCAAAGACCCAAATGAAGAGTTTCAAATCACCTGCAACTGCAAGGAGTTCTCCTCAAAAGAATGTTTCAGCAAGTACCACTCCTTCAAGGGATGCTCCTGACATAACTGCTGTTACCCCAAGAACCCCTTTGATTGGTACCCCCGTTGAAGAAGAAGATGATGATGATGAAGAAGTGTACAAGACTGCAAATGTTGAAGTGAGCAGGAGATCTGGTAAGAGGTGGAAGCTGATGGTACTAATTGAGTGGTTTGGTTTTGTTTGCATTGTGGGGTTTTTTATTGCATCCCTGTTAGTCCATAAGTTGCAACATAGGGAAATTTGGGGCTTGGAACTGTGGAAATGGTGTGTGCTAGCATTGGTTATCTTATGTGGTAGATTGGTCACTGAGTGGTTCATCAATGTTCTTGTTTTCTTGACCGAGAGGAACTTCTTGTTTAAGAAGAAGGTTTTGTATTTTGTTTATGGTGTGAAGAAGAGTGTTCAGGCCTTCATATGGTTGAGTTTGGTTCTTCTGGCATGGGGTTTGCTCTTCAACCATGGGGTCAAGAGAACCAGGAGAGTTACTAGGATCCTTAATTATATTACTAGAGCCCTTGCATCTTTTCTTATTGGAGCAGCTATATGGTTGGCGAAAATGCTTTTGATTAAGCTATTAGCTTCACATTTCCAATCTACTAGGTTCTTTGACAGGGTTCATGAGTCGATCTTCCATCAGTACATTCTTAGAACTCTTTCCGGCCCTCCCCTGATGGAGATTACGGAAACAGTATGCAAGAGTTCAAGTAGCGGTCGGCTGAGTTTCAGGACCATGATTAGAGATGATGGGAATAAAGGGAAGAAAGAAGAAGTAATTGATGTGGACAAGCTCAAGAAAATGAAACAAGAGAAGGTTTCTGCTTGGACAATGAAAGGATTGATTAATGTGATAAGGAGTTCTGGGTTGTCTACCATCTCCTATACACCTCAGAGTGTCGATGAAGATGAGCATGAGCAGACAGATAATGAGATTACCAGTGAGTGGGAAGCAAAGGCAGCTGCTTATCGAATTTTCAGTAATGTAGCCAAGCAAGGAAATAAGTACATTGAGAAGGAAGACCTCTTGCGCTTCATGACTGTTGAAGAGGTTGAGAATGTGCTTCCACTATTTGAAGGGACAGTTGCAACTGGAAGAATTAAGAGGAAGTCTCTGAAGAACTGGCTGGTGAAAGTCTACCATGAACGACAATCACTTGTACATTCACTAAATGATGCGAAAACAGCCGTCGATGAGTTGAACAACCTTGCTTCTGTAATTGTCATTGTTGTGATCATTATTGTGTGGCTACTTTTAATGGGCTTCTTGACAACCAAAGTTCTTCTCTTTATTTCATCTCAGCTTTTACTTGCAGCTTTTATGTTTGGTAATACAGCTAAGGCTGTATTTGAAGCGATTATATTTGTTTTTGTGATGCACCCATTTGATGTTGGTGATCGTTGTGTCATTGATGGTGTTCAGATGGTTGTAGAAGAGATGAACATACTGACTACAATCTTTTTGAGATATGACAATGAAAAGATTTGCTATCCAAATTCAGTTCTGGCAACCAAGCCAATTAGTAACTTCTACAGGAGTCCAGAAATGAGTGATTCAGTCGAATTTTCTGTTGATGTTTCTACTTCAATTGAAAGTATTGGAGCTTTGAAGGCGAGAATAAAAGTATACTTGGAGAGTAGGCCTCAGCACTGGCATCCCAACCACAGTATATTGGTTAAAGATATTGAGAATGTAAACAAGATGAAAATGGGTCTCAATGTTAATCACACCATAAATTTTCAGAATTACGGGGACAGGAGCAGCCGAAGATCCGAATTGCTCCTGGAGTTAAAGAAAATCCTTGAAGATCTTAATATTAAATATCATCTACTGCCACAAGAAGTTCATGTCAGTTATGTACGGTCCTAA 2241 0.4101 MELEEEKVEAHKKGTKNEVVLRISENETSSFSPHMASPSKGYTDSHVELTVPENLRGSVVQASTEFVTSTPRLLGRSDFSKPKSRMVEPPYPKGATFVEAKTQMKSFKSPATARSSPQKNVSASTTPSRDAPDITAVTPRTPLIGTPVEEEDDDDEEVYKTANVEVSRRSGKRWKLMVLIEWFGFVCIVGFFIASLLVHKLQHREIWGLELWKWCVLALVILCGRLVTEWFINVLVFLTERNFLFKKKVLYFVYGVKKSVQAFIWLSLVLLAWGLLFNHGVKRTRRVTRILNYITRALASFLIGAAIWLAKMLLIKLLASHFQSTRFFDRVHESIFHQYILRTLSGPPLMEITETVCKSSSSGRLSFRTMIRDDGNKGKKEEVIDVDKLKKMKQEKVSAWTMKGLINVIRSSGLSTISYTPQSVDEDEHEQTDNEITSEWEAKAAAYRIFSNVAKQGNKYIEKEDLLRFMTVEEVENVLPLFEGTVATGRIKRKSLKNWLVKVYHERQSLVHSLNDAKTAVDELNNLASVIVIVVIIIVWLLLMGFLTTKVLLFISSQLLLAAFMFGNTAKAVFEAIIFVFVMHPFDVGDRCVIDGVQMVVEEMNILTTIFLRYDNEKICYPNSVLATKPISNFYRSPEMSDSVEFSVDVSTSIESIGALKARIKVYLESRPQHWHPNHSILVKDIENVNKMKMGLNVNHTINFQNYGDRSSRRSELLLELKKILEDLNIKYHLLPQEVHVSYVRS* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1553 746 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 12 744 - -
Dod03g1553 746 MobiDBLite consensus disorder prediction 106 150 - -
Dod03g1553 746 Pfam Mechanosensitive ion channel 526 731 IPR006685 GO:0016020|GO:0055085
Dod03g1553 746 MobiDBLite consensus disorder prediction 106 132 - -
Dod03g1553 746 SUPERFAMILY Sm-like ribonucleoproteins 575 634 IPR010920 -
Dod03g1553 746 Gene3D - 585 634 IPR023408 -
Dod03g1553 746 MobiDBLite consensus disorder prediction 23 39 - -
Dod03g1553 746 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 12 744 IPR016688 -
Dod03g1553 746 MobiDBLite consensus disorder prediction 23 44 - -
Dod03g1553 746 PIRSF Memb_At2g17000 2 746 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1553 Dod-Chr3 21179996 21183775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1553 18 742 Mechanosensitive Ion Channel Family AT5G12080 50.614 0.0 703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1553 K22048 - gmx:100777332 1074.69