Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1552 ATGGGTGATGTTCTAAGCCCCTTCACAGTGTCACCCCCTCCTCCACCTTCTTCCTCAACAAGCAAGAACAGCATGCCCATGTTGTACTATGGCCTAGTGGTGGTGGGAACTGCATCCGTAGTTCTAGCCATATACAACCTCATCATCATCAAACGTTGCAACAGGCGCCACACACACGAGACACAGTCTCAGCCTCCTGCAATAAGGCCAAATAATAGGCTGGTTGAAGTAGTGGTCCCAACAACAAGTGAAGGCAGAAGCTTTGACAATTCACAAAGGAATTACTTGCTCTCAAGCTTCAAGTACAAGAAAGAAGTGGCAGCACCGAAAGAGGGATCAGAGGGAGATCAAGAGCAACAACAACAAGAAGGTGGTGGTGATGATGATGGTAACGATAGTGAGTGTCCTGTTTGCTTATCAGTGTATGAAGAAGGAGAGGAAGTGAGGAAGCTACCAAGGTGCAAGCACTCGTTCCATGCCCTTTGCATAGACATGTGGCTTTACTCTCACTTTGATTGCCCAATTTGTAGAACACCCGTCGGCCCCTTTTGTCACCCTTTTCCGGCAGAGAATCCTCGTTGA 582 0.4794 MGDVLSPFTVSPPPPPSSSTSKNSMPMLYYGLVVVGTASVVLAIYNLIIIKRCNRRHTHETQSQPPAIRPNNRLVEVVVPTTSEGRSFDNSQRNYLLSSFKYKKEVAAPKEGSEGDQEQQQQEGGGDDDGNDSECPVCLSVYEEGEEVRKLPRCKHSFHALCIDMWLYSHFDCPICRTPVGPFCHPFPAENPR* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1552 193 MobiDBLite consensus disorder prediction 107 132 - -
Dod03g1552 193 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Dod03g1552 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 181 IPR013083 -
Dod03g1552 193 SUPERFAMILY RING/U-box 128 183 - -
Dod03g1552 193 SMART ring_2 135 176 IPR001841 -
Dod03g1552 193 CDD RING-H2_EL5_like 134 177 - -
Dod03g1552 193 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 182 IPR044675 -
Dod03g1552 193 Pfam Ring finger domain 134 177 IPR001841 -
Dod03g1552 193 MobiDBLite consensus disorder prediction 1 23 - -
Dod03g1552 193 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 11 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1552 Dod-Chr3 21162778 21163624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1552 31 186 C3H Transcription Factor Family AT5G17600 30.128 2.08e-17 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1552 - - adu:107479105 249.21