Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1548 ATGAATCCATTTCTGTCGTCGAATCATCCTAATACTGTGTTCAGTTATCCACAAGTTGATCGCAACCACTCAATGGCTCATGGTCCTTATACTTATGGTGATCCATTTTTTGCTGGTTCATTAGTTGCTTATGGACCACAGGCTATTAGTCAACCCCAAATACTGCCCCAGATGCTGGGATTAACATCCACCAGAGTTGCATTACCACTGGAACTTGCAGAAGATGGCCCCATTTATGTCAATGCAAAACAATACCATGGTATACTAAGAAGGCGTCAGTCCCGGGCAAAGCTTGAGGCTCAAAACAAACTCATCAAAAGTCGTAAGCCATATCTTCACGAGTCTCGGCACCGCCATGCTGTGAATAGGGTGAGGGGATCTGGGGGGAGATTCCTCAGTACCAAACAGCTTCAACAGTCTAATGCAGAATTCGCCAATGGTGCACATTCTGGCTCAGACACCGACAACATATATCAAAAGAAAGATGCATCAGAGGTGGAAAGTCACCCCTCAAGAACCGGAGAGAATGCTTCTTCCATCACAACCTGTTCCGACCGGACAACTTTATCCAGCAGCAGTGTCAATAGGCAGCCTGAGCTTATGTTCCTGCCGAGCCCTCCAAACATGAGCGGAGCACCCCAGTGTGGTGGGGGACTCACCTTTGGCGGAACAAAGCAACGTGCCCCAGTTGTCCGGTGA 699 0.4821 MNPFLSSNHPNTVFSYPQVDRNHSMAHGPYTYGDPFFAGSLVAYGPQAISQPQILPQMLGLTSTRVALPLELAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHAVNRVRGSGGRFLSTKQLQQSNAEFANGAHSGSDTDNIYQKKDASEVESHPSRTGENASSITTCSDRTTLSSSSVNRQPELMFLPSPPNMSGAPQCGGGLTFGGTKQRAPVVR* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1548 232 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 221 IPR001289 GO:0003700|GO:0006355
Dod03g1548 232 ProSiteProfiles NF-YA/HAP2 family profile. 74 134 IPR001289 GO:0003700|GO:0006355
Dod03g1548 232 MobiDBLite consensus disorder prediction 161 232 - -
Dod03g1548 232 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 77 131 IPR001289 GO:0003700|GO:0006355
Dod03g1548 232 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 1 221 - -
Dod03g1548 232 PRINTS CCAAT-binding transcription factor subunit B signature 108 131 IPR001289 GO:0003700|GO:0006355
Dod03g1548 232 PRINTS CCAAT-binding transcription factor subunit B signature 77 99 IPR001289 GO:0003700|GO:0006355
Dod03g1548 232 Gene3D - 74 136 - -
Dod03g1548 232 SMART cbf3 73 134 IPR001289 GO:0003700|GO:0006355
Dod03g1548 232 MobiDBLite consensus disorder prediction 170 199 - -
Dod03g1548 232 ProSitePatterns NF-YA/HAP2 subunit signature. 79 99 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1548 Dod-Chr3 21086423 21091079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1548 24 140 CCAAT-HAP2 Transcription Factor Family AT1G17590 60.504 1.89e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Dod03g1548 CBFB_NFYA 3.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1548 K08064 - gmx:100793856 335.88