Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1543 ATGGCCCAAAAATTTATTTACACTCACAAAAATCAAAAGGACGGTTATGATGCCTCTCCTCCCCACAAATCCCCTGTTCCAACAAATACCTTCAGAAACAAACTCAAAAAGTTGCTGACATGGACACTTGACACCATTCAAGCCAGGGTGGGGCTGTTGGCATTGATTGGTGGTGTTGAGGCCCAAATGAAGAGGTCTCCTGCTGCTGCAGCATTATCTTCTTCTTGTTCATCATCTTCTTCTGTTGGGTTTGAATCTCCAAAAAGGAGGCGTAAGCGCCCAACAAGGAATCTGAAGCCGCGGCAAAGTAACACTAACCAGAACCAAACCAATGGCTGCAGAAGAAGCTCAATTTACAGAGGAGTCACCAGGCACAGATTGACTGGGAGGTTCGAAGCTCACCTTTGGGATAAGAGTTCTTGGAACAGTGTTCAGACCAAGAAGGGACGCCAAGGGGCATATGATATTGAAGAAAGTGCAGCCCGTACGTATGATCTTGCAGCCCTTAAATATTGGGGAAAGGATGCAATCTTGAATTTCCCGATAGAAACATATACCAAGGAACTTGAGGAAATGGACAAATTTACCAGAGAAGAGTATTTGGCTTCTTTGCGGCGACATAGCAATGGTTTTTCTAGAGGCGTTTCTAAGTACCGTGGGGTGGCTAGGCATCACCACAATGGCCGCTGGGAAGCTCGCATTGGAAGAGTAAATGGTAGCAAGTACATCTATTTGGGGACATTTGAAACTCAAGAGGAGGCAGCCGAGGCATACGATAAGGCAGCATTGGAGTACAGAGGAGTCAATGCAGTGACCAATTTTGACAAAAGAAAATACAACCAAATAGCAAAGAGGAAAAGTGAGCAGTCCCAAGAAACAGACACAGTTCAGAAAGAGAAGACGAAAAGTGAGCAATCCCAAGCAACAGGAACAGTTCCCAATTTCTCTGAATCCCAAGTAGCACAAGTTCTACAGACAACTAAACAAACCCCTCCTGAAAATCCGGGAACACAACAACAACAACAACAACAACAACAGCTGCACCAATTAGTACAATGCAGCGATGTCCCTCAAACTATGGAATCCCCACCAGTTACTACTTCTTCGGTTGTGGACAATAATATCCCCGACAAGGGCCTACCATGGAGCTTCATGGACAGTGGTCTACCTGACATGACATTAAGCGAAGCTGACGATTTTCTGAGCATGTTCGACGGCGTAGACTTGGATGCTGACATTCATTTTCTGTTTGGCTCAGAGCCTACTGAGAGTGATTTCAGTTTGAGTGCAGTTTTGGACAGTGTTGGCAGTGAACATGTGTTGTGTGGGGCTGCTGGAAACAAGAACAAGGTGGAGGATGACATAAAGCAGAATAAGCAATCATCCTCTTCCTCCCCAGCTTCTTCTTCTTTTTCTTCTTCACAGTCATCTCCAAAAGATACAAGTCCTTCTCCAAAATCTCCTTAG 1467 0.4506 MAQKFIYTHKNQKDGYDASPPHKSPVPTNTFRNKLKKLLTWTLDTIQARVGLLALIGGVEAQMKRSPAAAALSSSCSSSSSVGFESPKRRRKRPTRNLKPRQSNTNQNQTNGCRRSSIYRGVTRHRLTGRFEAHLWDKSSWNSVQTKKGRQGAYDIEESAARTYDLAALKYWGKDAILNFPIETYTKELEEMDKFTREEYLASLRRHSNGFSRGVSKYRGVARHHHNGRWEARIGRVNGSKYIYLGTFETQEEAAEAYDKAALEYRGVNAVTNFDKRKYNQIAKRKSEQSQETDTVQKEKTKSEQSQATGTVPNFSESQVAQVLQTTKQTPPENPGTQQQQQQQQQLHQLVQCSDVPQTMESPPVTTSSVVDNNIPDKGLPWSFMDSGLPDMTLSEADDFLSMFDGVDLDADIHFLFGSEPTESDFSLSAVLDSVGSEHVLCGAAGNKNKVEDDIKQNKQSSSSSPASSSFSSSQSSPKDTSPSPKSP* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1543 488 MobiDBLite consensus disorder prediction 281 346 - -
Dod03g1543 488 SMART rav1_2 217 281 IPR001471 GO:0003700|GO:0006355
Dod03g1543 488 SMART rav1_2 118 187 IPR001471 GO:0003700|GO:0006355
Dod03g1543 488 MobiDBLite consensus disorder prediction 70 117 - -
Dod03g1543 488 MobiDBLite consensus disorder prediction 99 117 - -
Dod03g1543 488 CDD AP2 117 182 IPR001471 GO:0003700|GO:0006355
Dod03g1543 488 ProSiteProfiles AP2/ERF domain profile. 118 181 IPR001471 GO:0003700|GO:0006355
Dod03g1543 488 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 63 457 - -
Dod03g1543 488 SUPERFAMILY DNA-binding domain 216 275 IPR016177 GO:0003677
Dod03g1543 488 MobiDBLite consensus disorder prediction 281 301 - -
Dod03g1543 488 MobiDBLite consensus disorder prediction 446 488 - -
Dod03g1543 488 Pfam AP2 domain 118 173 IPR001471 GO:0003700|GO:0006355
Dod03g1543 488 Pfam AP2 domain 216 267 IPR001471 GO:0003700|GO:0006355
Dod03g1543 488 Gene3D AP2/ERF domain 118 183 IPR036955 GO:0003700|GO:0006355
Dod03g1543 488 Gene3D AP2/ERF domain 216 276 IPR036955 GO:0003700|GO:0006355
Dod03g1543 488 MobiDBLite consensus disorder prediction 458 488 - -
Dod03g1543 488 MobiDBLite consensus disorder prediction 302 346 - -
Dod03g1543 488 ProSiteProfiles AP2/ERF domain profile. 217 275 IPR001471 GO:0003700|GO:0006355
Dod03g1543 488 SUPERFAMILY DNA-binding domain 117 183 IPR016177 GO:0003677
Dod03g1543 488 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 63 457 - -
Dod03g1543 488 MobiDBLite consensus disorder prediction 70 84 - -
Dod03g1543 488 MobiDBLite consensus disorder prediction 1 29 - -
Dod03g1543 488 CDD AP2 216 275 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1543 Dod-Chr3 21010661 21016336 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1543 114 280 AP2-EREBP Transcription Factor Family AT5G57390 66.471 1.95e-75 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Dod03g1543 AP2 6.6e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1543 - - gmx:100789774 390.193