Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod03g1542 | ATGGATGTTGTTGGAATCAGTGAGGAAGAGCAAGAGGCAATTTTTAGAGTTGTTGCAGCAATACTGCACCTTGGAAATATTGGATTTTCAAAAGGAGAGGAGATTGATTCTTCTGTCATCAAGGATGAGAAGTCTAGGTTCCACCTTAGTACAACTGATGAACTTCTCAAGTGTGATGCTAAGAGCTTGGAAGATGCACTGATTAAGCGTGTGATGATAACACCTGAGGAGGTTATTACAAGAACCCTTGATCCTGTTGCAGCTGTTGGTAGCAGGGATGCAATAGCTAAAACCATTTATTCACGTTTGTTTGATTGGCTTGTGGAGAAGATTAATCTTTCAATTGGACAAGATCTGAATTCACAGTCTATCATTGGAGTTCTTGATATCTATGGGTTTGAAAGTTTTAAGATCAACAGTTTTGAGCAGTTCTGTATTAATTTTACAAATGAAAAGCTGCAACAACACTTTAATCAGGGAGTTCTTGAGGCAATTAGAATCAGCTGTGCTGGATATCCTACGAGACGGACCTTTTATGAGTTTCTTAACCGATTTGGTGTTCTTGCCCCTGAAGTTCTAGATGGAAACTTTGATGACAAGGTTGCATGTCAAAAGATTCTGGGTAAAATGGGTATGAAAGGCTATCAGATAGGCAAGACGAAGGTTTTCCTAAGAGCTGGTCAGATGGCCGAGTTGGATGCAAGAAGAGCAGAAGTTCTTGGAAATGCAGCCAGGATCATTCAGAGACAAATACGCACTCATATTGCACGCAAGGAATTTGTTGAACTGCGTCAAGCTGTAATACACTTGCAATCTAGTTTGCTAGGGATATTGGCCCGGAAGCTGTATGAGCAATTGCGACGTGAAGCAGCAGCTGTGAAAATAGAGAAAAACTTTAAAGGATACGTTGCCTGGAAATCTTACATAACAGCACGATCATCTGCAATCACATTGCAGACTGGGTTAAGGGCTATGAAAGCTCGTGATGAATTTAGATTTCGAAAGCAAACTAAGTCTGCTGTCCTCATCCAGGCTCATTTGCAAGGGCACATTGCATATTCTTACTATAAAAGACTGCAGAAAGCAGCTGTTGTTACTCACTGTGGTTGGAGAAGGAGGGTTGCTAGGAGGGAACTTAGAAAGCTCAAAATGGCTGCAAGAGAAACAGGGGCCCTTAAAGAAGCAAAAGACAAACTAGAAAAGCGTGTTGAAGAACTTACGTGGCGTTTGCAAATTGAGAAGCATTTAAGAACTGATTTGGAGGAGGAAAAAACACAAGAAATTGCTAAGTTACAAGATGCTTTGCATGCAATGCAAATACAAGTTGAAGAAGCAAATGCCAGAGTCCTCAAAGAGCATGAGGCAGCTCAGAAAGCCAGTGAAGAAGCACCTCCAGTTATCAAGGAGACTCCTGTTATAATTCAAGATACTGAAAAGATTAATTCCTTGATGGCTGAAGTCAGTAGTTTGAAGGAATTACTGCTATTAGAAAGAAAGGATAAAGAAGAGGCCAGAAAAGCTCAGGCTGAGGCTGAGGCTATAAATGTGAAGCTGGCAAAAAAAGTTGACGATTATCAGCACAAAGTGGATCAGCTCCAAGAAATGGTTCAAAGGTTGGAAGACAAAATCTCCAATGCAGAGTCAGAAAATCAAGTTCTTCGTCAGCAAGCCTTGGCTGTGTCTCCAACTGGAAAAGCTCTATCTGCAAGACCAAAGACAGTGATTATTCAAAGGACGCCAGAAAACGGGAATGCCTTAAATGGTGGAGGAAAAATTGAATCAGATTTGACTCTTGTTTCAAATGTACGTGAGCCTGAATCTGAGGGAAAACCACAAAAATCTCTAAATGAGAAACAGCAGGAGAACCAAGAATTGTTGATCAAATGCATATCACAAGATTTGGGATTCTCTCGGGGCAAACCTGTTGCTGCATGTGTGATATATAAGTGCCTTCTTCACTGGAGATCATTTGAAGTTGAAAGAACAATTGTCTTTGCCCGTATCATTCAAACAATTGCTTCAGTTGTTGACGCACAGGATAATACTAATGTATTAGCATATTGGTTGTCTAATACATCTACTTCGTTGTTGCTACTCCAACGCACTCTCAAAGCAAGTGGAGCAGCTAGCTTAACAGCCCAAAGGCGGAGAACAGCATCATCTTCAATGTTTGGGAGAATGTCTCAAGGGCGAAGAGCATCTCCCCAAAGTGCAATGTCACTTGTAAATAATCGAGGGGTTGGCAGATTGGATGATTTACGGCAAGTGGAAGCAAAATATCCAGCTCTTCTGTTTAAGCAACATCTCACTGCCTTCCTTGAAAAAATATATGGAATGATAAGAGACAATCTGAAAAGGGAGATATCTCCATTACTTGGATTGTGTATCCAGGCTCCAAAGACCTCACGGCAAAGTTTAGTGAAAGGACACCCACGTGCTAATGCAGCTACTCAACAAGCTTTAACTGCTCACTGGCAAAGTATTGTGAACAACTTAAACAATTATCTAAAGATAATGAAAGCAAATTATGTGCCTCCATTCTTGGTCTGCAAGGTGTTCACTCAGATATTCTCGTTCATTAATGTTCAATTATTCAACAGTCTTCTGTTGCGTCGTGAGTGTTGTTCATTCAGCAACGGGGAGTATGTAAAGACAGGTTTGGGAGAATTAGAGAAGTGGTGTATTGAGGCAACAGATGAGTATGCTGGCTCAGCTTGGGAGGAATTGAAACATATCAGGCAGGCTGTTGGATTCCTAGTGATGCATCAGAAACCCAAAAAGACGCTTAATGAAATAACAAAAGAGCTTTGCCCTGTTCTTAGTATACAACAGTTATACAGGATCAGTACAATGTACTGGGATGACAAATATGGCACGCACACTGTATCTGCAGAAGTTATTGCAAACATGAGAGCAATGATGTCTGAGGAATCTAACAATGCTGTCAGCAGTTCTTTCCTATTAGATGATGATTCAAGCATTCCATTTTCGGTGGATGACATTTCCAAATCAATGCAACGAATAGAAGTAGCAGACGTGGAACCACCTCCATTGATACGTGACAACTCAGGGTTTGGGTTCTTACTAGCACGTTCAGAGTGA | 3102 | 0.4097 | MDVVGISEEEQEAIFRVVAAILHLGNIGFSKGEEIDSSVIKDEKSRFHLSTTDELLKCDAKSLEDALIKRVMITPEEVITRTLDPVAAVGSRDAIAKTIYSRLFDWLVEKINLSIGQDLNSQSIIGVLDIYGFESFKINSFEQFCINFTNEKLQQHFNQGVLEAIRISCAGYPTRRTFYEFLNRFGVLAPEVLDGNFDDKVACQKILGKMGMKGYQIGKTKVFLRAGQMAELDARRAEVLGNAARIIQRQIRTHIARKEFVELRQAVIHLQSSLLGILARKLYEQLRREAAAVKIEKNFKGYVAWKSYITARSSAITLQTGLRAMKARDEFRFRKQTKSAVLIQAHLQGHIAYSYYKRLQKAAVVTHCGWRRRVARRELRKLKMAARETGALKEAKDKLEKRVEELTWRLQIEKHLRTDLEEEKTQEIAKLQDALHAMQIQVEEANARVLKEHEAAQKASEEAPPVIKETPVIIQDTEKINSLMAEVSSLKELLLLERKDKEEARKAQAEAEAINVKLAKKVDDYQHKVDQLQEMVQRLEDKISNAESENQVLRQQALAVSPTGKALSARPKTVIIQRTPENGNALNGGGKIESDLTLVSNVREPESEGKPQKSLNEKQQENQELLIKCISQDLGFSRGKPVAACVIYKCLLHWRSFEVERTIVFARIIQTIASVVDAQDNTNVLAYWLSNTSTSLLLLQRTLKASGAASLTAQRRRTASSSMFGRMSQGRRASPQSAMSLVNNRGVGRLDDLRQVEAKYPALLFKQHLTAFLEKIYGMIRDNLKREISPLLGLCIQAPKTSRQSLVKGHPRANAATQQALTAHWQSIVNNLNNYLKIMKANYVPPFLVCKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKTGLGELEKWCIEATDEYAGSAWEELKHIRQAVGFLVMHQKPKKTLNEITKELCPVLSIQQLYRISTMYWDDKYGTHTVSAEVIANMRAMMSEESNNAVSSSFLLDDDSSIPFSVDDISKSMQRIEVADVEPPPLIRDNSGFGFLLARSE* | 1034 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod03g1542 | 1033 | Pfam | IQ calmodulin-binding motif | 242 | 260 | IPR000048 | GO:0005515 | |
| Dod03g1542 | 1033 | Pfam | IQ calmodulin-binding motif | 312 | 332 | IPR000048 | GO:0005515 | |
| Dod03g1542 | 1033 | ProSiteProfiles | IQ motif profile. | 311 | 340 | IPR000048 | GO:0005515 | |
| Dod03g1542 | 1033 | PANTHER | MYOSIN | 1 | 161 | - | - | |
| Dod03g1542 | 1033 | PANTHER | MYOSIN | 160 | 1029 | - | - | |
| Dod03g1542 | 1033 | Gene3D | - | 177 | 238 | - | - | |
| Dod03g1542 | 1033 | SUPERFAMILY | PspA lactotransferrin-binding region | 477 | 552 | - | - | |
| Dod03g1542 | 1033 | ProSiteProfiles | Dilute domain profile. | 666 | 976 | IPR002710 | - | |
| Dod03g1542 | 1033 | ProSiteProfiles | IQ motif profile. | 242 | 267 | IPR000048 | GO:0005515 | |
| Dod03g1542 | 1033 | Pfam | Myosin head (motor domain) | 1 | 159 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Dod03g1542 | 1033 | Gene3D | - | 291 | 337 | - | - | |
| Dod03g1542 | 1033 | Gene3D | - | 338 | 387 | - | - | |
| Dod03g1542 | 1033 | Gene3D | - | 240 | 290 | - | - | |
| Dod03g1542 | 1033 | ProSiteProfiles | Myosin motor domain profile. | 1 | 163 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Dod03g1542 | 1033 | Gene3D | - | 141 | 176 | - | - | |
| Dod03g1542 | 1033 | ProSiteProfiles | Myosin motor domain profile. | 164 | 237 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Dod03g1542 | 1033 | Pfam | DIL domain | 852 | 955 | IPR002710 | - | |
| Dod03g1542 | 1033 | Coils | Coil | 490 | 556 | - | - | |
| Dod03g1542 | 1033 | Coils | Coil | 421 | 462 | - | - | |
| Dod03g1542 | 1033 | CDD | MyosinXI_CBD | 617 | 999 | IPR037975 | GO:0007015 | |
| Dod03g1542 | 1033 | SMART | iq_5 | 358 | 380 | IPR000048 | GO:0005515 | |
| Dod03g1542 | 1033 | SMART | iq_5 | 287 | 309 | IPR000048 | GO:0005515 | |
| Dod03g1542 | 1033 | SMART | iq_5 | 239 | 261 | IPR000048 | GO:0005515 | |
| Dod03g1542 | 1033 | SMART | iq_5 | 335 | 357 | IPR000048 | GO:0005515 | |
| Dod03g1542 | 1033 | SMART | iq_5 | 262 | 284 | IPR000048 | GO:0005515 | |
| Dod03g1542 | 1033 | SMART | iq_5 | 310 | 332 | IPR000048 | GO:0005515 | |
| Dod03g1542 | 1033 | ProSiteProfiles | IQ motif profile. | 288 | 317 | IPR000048 | GO:0005515 | |
| Dod03g1542 | 1033 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 290 | IPR027417 | - | |
| Dod03g1542 | 1033 | SMART | MYSc_2a | 1 | 238 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Dod03g1542 | 1033 | PANTHER | MYOSIN-5 | 1 | 161 | - | - | |
| Dod03g1542 | 1033 | PANTHER | MYOSIN-5 | 160 | 1029 | - | - | |
| Dod03g1542 | 1033 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 7 | 140 | - | - | |
| Dod03g1542 | 1033 | ProSiteProfiles | IQ motif profile. | 263 | 292 | IPR000048 | GO:0005515 | |
| Dod03g1542 | 1033 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 290 | 388 | IPR027417 | - | |
| Dod03g1542 | 1033 | SMART | DIL_2 | 851 | 958 | IPR002710 | - | |
| Dod03g1542 | 1033 | Coils | Coil | 382 | 416 | - | - | |
| Dod03g1542 | 1033 | ProSiteProfiles | IQ motif profile. | 336 | 362 | IPR000048 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dod03g1542 | Dod-Chr3 | 20996943 | 21009662 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dod03g1542 | 1 | 163 | Myosins gene family | AT5G20490 | 82.822 | 6.09e-83 | 293 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod03g1542 | K10357 | - | gmx:100804820 | 1448.34 |