Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1518 ATGGACTTAAGAACCGCGTTCTCTGACTCAAACGATGTGAGCACCAGCAGCGGCGTGTTCTACACCATGCCCACCACCGAAACCCATTTCTCAACAGCTTCACACCTTCCACCACCACCACCGCCGCCGCCGCCACCAACTTCCGACATCACGGCCCTCATGCGGCTCTCCGAGAATCTCGGCTCGATCTTCGACTCCCCCTCGTCGGAGCACGACTTCTACGCCGACGCGAGGATCGTGCTAGCCGACGGCAGAGAACTCGCCGTGCACCGCTGCATTCTGGCGGCGAGGAGCTGCTTCTTCAGGAGCGTGTTTGCGGCGGGTTCTTCTGCTACGAATACGGAGAAGAGTGGTTTTGGGAAGTTTCAGATGAAGGAGTTTGCGAAGGAGTATGATGTTGGTGTTGAAGCGCTTGGTGCTGTTGTTGGGTACTTGTACTGTGGGAGGGTCACGCCTTTGCCAAGAGGTGTGTGTGTTTGTATGGATGATGATTGTAACCATTTGGGGTGTAGGCCTGCTGTGGATTTCATGGTTCAGGTGCTATATGCTTCTTCTACCTTCCAGATATCTGAGTTGGTTGCTCTTTATCAGAGACATCTACTAGACATTCTAGACAACGTTGCAATAGATGACATTTTGGTGGTTCTTTCTGTTGCAAATAAATGTGGCAAAATGTGTGAGGGGTTGCTAGCAAGGTGCACTGAGATCATAGTTAAATCTGATGCCGACATTACCACTCTTGAAAAATCACTGCCCCAGCCCATAGTTAAACAAATCGTGGATAAACGCATAGAACTCGGCTTGGACATGCCTGAAACCTTATGTTTCCCTGACAAACATGTCAAGAGAATACATAGGGCCCTGGATTCAGATGATGTGGAATTAGTCAGAATGCTTTTGAAAGAGGGACACACTAATCTAGATGAGGCTTGTGCTCTTCACTATGCTGTTGCATACTGTGATGCAAAGACCACGACCGAGCTTCTTGATCTCAGTTTAGCTGATGTCAATCACAAGAACCTCAGGGGATATAGTGTGCTGCATATTGCTGCAATGAGGAAAGAGCCCAGGATTATAGTTTCGCTGTTGACAAAGGGAGCTCATCCTTCTGATCTTACCTCGGATGGTAGGAAAGCCCTTCAGATTTCGAAGCGACTAACCAAGGCTGTGGATTATTTTAAGTCCATGGAGGAAGGGAAGGTATCGTCCAACGACCGGTTGTGCATAGAGATATTGGAGCAAGCTGAGGGAAGGGAGCCTTTGCTAGGAGAGGCATCACTTTCACTGGCTATGGCTGGGGATGATTTACGTGTGAAATTGTTGTACCTGGAAAACAGAGTTGGATTGGCGAAAGTTTTGTTTCCAATGGAAGCAAAGGTTGTGATGGATATTGCTCAAGTTGACGGCACATCTGAATTTCCATCAGAAGACATCTACCCTCCAAATATGCGTGGTCGTAGCACTGTGGACTTGAATGAGGCACCTTTCAAAATGAAAGAGGAGCACTTAGTCAGGATGAGAGCACTGTCTAGAACAGTGGAATTAGGGAAACGCTTCTTCCCTCGTTGCTCAGAAGTTTTGAACAAGATCATGGATGCTGATGACCTATCTCAGCTTGCATGTATGGGAAATGACAGCCCTGAAGAAAGACTAATGAAGAGAAGAAGGTATGTTGAGCTCCAAGAAATTCTGAGTAAGGCCTTCAATGAGGACAAAGAGGAGTTTGATAGGTCTGCCATGTCATCATCATCATCTTCCACATCAGTAGGAGTTGTTAGGCGGCCTAATGGCAAGCTAGCCATGAAGAACTAG 1812 0.4763 MDLRTAFSDSNDVSTSSGVFYTMPTTETHFSTASHLPPPPPPPPPPTSDITALMRLSENLGSIFDSPSSEHDFYADARIVLADGRELAVHRCILAARSCFFRSVFAAGSSATNTEKSGFGKFQMKEFAKEYDVGVEALGAVVGYLYCGRVTPLPRGVCVCMDDDCNHLGCRPAVDFMVQVLYASSTFQISELVALYQRHLLDILDNVAIDDILVVLSVANKCGKMCEGLLARCTEIIVKSDADITTLEKSLPQPIVKQIVDKRIELGLDMPETLCFPDKHVKRIHRALDSDDVELVRMLLKEGHTNLDEACALHYAVAYCDAKTTTELLDLSLADVNHKNLRGYSVLHIAAMRKEPRIIVSLLTKGAHPSDLTSDGRKALQISKRLTKAVDYFKSMEEGKVSSNDRLCIEILEQAEGREPLLGEASLSLAMAGDDLRVKLLYLENRVGLAKVLFPMEAKVVMDIAQVDGTSEFPSEDIYPPNMRGRSTVDLNEAPFKMKEEHLVRMRALSRTVELGKRFFPRCSEVLNKIMDADDLSQLACMGNDSPEERLMKRRRYVELQEILSKAFNEDKEEFDRSAMSSSSSSTSVGVVRRPNGKLAMKN* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1518 603 Pfam BTB/POZ domain 69 200 IPR000210 GO:0005515
Dod03g1518 603 MobiDBLite consensus disorder prediction 34 49 - -
Dod03g1518 603 Gene3D Potassium Channel Kv1.1; Chain A 51 239 IPR011333 -
Dod03g1518 603 CDD BTB_POZ_NPR_plant 55 204 - -
Dod03g1518 603 Pfam Ankyrin repeat 343 370 IPR002110 GO:0005515
Dod03g1518 603 ProSiteProfiles BTB domain profile. 75 154 IPR000210 GO:0005515
Dod03g1518 603 MobiDBLite consensus disorder prediction 572 603 - -
Dod03g1518 603 Gene3D - 255 466 IPR036770 -
Dod03g1518 603 SMART ANK_2a 279 309 IPR002110 GO:0005515
Dod03g1518 603 SMART ANK_2a 342 371 IPR002110 GO:0005515
Dod03g1518 603 Pfam NPR1/NIM1 like defence protein C terminal 384 587 IPR021094 -
Dod03g1518 603 SUPERFAMILY Ankyrin repeat 281 384 IPR036770 -
Dod03g1518 603 MobiDBLite consensus disorder prediction 30 50 - -
Dod03g1518 603 PANTHER REGULATORY PROTEIN NPR2 4 598 - -
Dod03g1518 603 SUPERFAMILY POZ domain 70 202 IPR011333 -
Dod03g1518 603 ProSiteProfiles Ankyrin repeat profile. 342 374 IPR002110 GO:0005515
Dod03g1518 603 PANTHER REGULATORY PROTEIN NPR3 4 598 IPR044292 GO:0009862|GO:2000022|GO:2000031
Dod03g1518 603 SMART BTB_4 75 204 IPR000210 GO:0005515
Dod03g1518 603 Pfam Domain of unknown function (DUF3420) 243 285 IPR024228 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1518 Dod-Chr3 20670153 20676833 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Dod03g1518 NPR1_like_C 1.6e-89 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1518 K14508 - gmx:100800032 832.787