Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1506 ATGCACCCTATGGAAGGCGTCTTTACCCTCTCTGAAGCCGCCAGACCTGGTTTTCTCCGCTCTCTAGTGCAGTCTTTTGGCTGCGCTTACATTTGTCTGTGGTCATATGATTCCACTTCACCTAATCGCTTGTTCTTCTTGGATGGTTTCTACAACTTAAGAAACAATAACCAAGCCAGCTCTTCTCTGGGGAGTGTAGCACAACAGCTTTTTAACCAGTACAGGAATTTAGCATTTGATGTTAATGATGACCGTGTTCCTGGACTAGCTTTTAGGAACAGCCGACCCTACCTAGAGCTGCAACAACCGGATCTTCTGAGACTGGCGTGGACTGAAATACAAACACAATTCTTTCAGGAAGCAAGGATTAAGACTGCTGTCTTCATGGGGTGCAACAAAGGGGAAATTGAACTTGGTTTCTTAAATATGTCTCAAGCTGACATTCAAACAGCACTGAGTAGTCTGTTCCCTGAAGATTTCTCTAGACCGGCACAGCAAATTGATCACAATAATCCACCTTCATCATCTTCATCTTCTTTATTGTCCACAGGTAGCCCTGAATACTCTTCTCTGATATTCAGTCTCCCGGGCACTTCCCAGTTTCCTGAAACACTTGGTGGGGTTCCCTCAAGGCCAACTGTGTCAAACACAGCAACTAGCCCTCACCAACAAGCCATACAAGCATTGGCTCATCAAGCCACTACTCCTCCAAGTCAAATATTCCCCACACCAGAGATTGAACATGATGCACTCATGAGAGCAATCCTTAATGTGATATCTCACCCTTCTCATCAGCAACAATCTGTGGTGCATCCTGAAACCAGTGCTTTCAAGAGGTATAGAGCAGATATAAGTCCAAGCATCAGTTCCCAAATGGGGTCCAATTTCCGCAGGCAAAGCATGCTGAAGAGATCATTTGCATTCTTTAGAAGCTTAAACTTTATGAGAATGAGGGAACGCATTCAAGCAACTCGTCCCTCTAGTACACAGCTGCATCATATGATATCAGAGAGAAGAAGGCGTGAGAAACTGAATGAGAATTTTCAGGCACTTAGAGCACTACTTCCTACAGGAACTAAGAAAGACAAGGCGTCTATACTAACAACTGCCAAGGAGACATTGAGTTCTTTGACGGCTGAAATTGACAAGCTAAACAAAAGAAATCAGGAGTTGACATCACTTTTGCCTCCAGCCAAGGAAACTAGTACTGAAGAAACCAAAGCTATCATCTTGCCATCAAATGAAAGATTCCATGTCCAAATTTCAGATGCACCACAACCAAGCTCATCAGAAGAACGAATGGTGGACTTGCAAGTGGCTGTGAGAGGGCAAATTTCACAAGTTGATGCATTGATTCGGTTATTGGAATTCTTGAAAAAGGCTCAGAATAATGTGAACTTGGTTTCCATGGACGCAAACACCCATTTTGCAGAAGGGAATACACTAAATCAACTAACCTTCAGACTAAGGATTGTTCAGGGAAGTGAATGGGACGAGTCTGCCTTCCGGGAAGCAGTGAGAAGAGTGGTTGGAGACTTGGAACAGTCCCAGGTTGACCAACAACTATGA 1569 0.4398 MHPMEGVFTLSEAARPGFLRSLVQSFGCAYICLWSYDSTSPNRLFFLDGFYNLRNNNQASSSLGSVAQQLFNQYRNLAFDVNDDRVPGLAFRNSRPYLELQQPDLLRLAWTEIQTQFFQEARIKTAVFMGCNKGEIELGFLNMSQADIQTALSSLFPEDFSRPAQQIDHNNPPSSSSSSLLSTGSPEYSSLIFSLPGTSQFPETLGGVPSRPTVSNTATSPHQQAIQALAHQATTPPSQIFPTPEIEHDALMRAILNVISHPSHQQQSVVHPETSAFKRYRADISPSISSQMGSNFRRQSMLKRSFAFFRSLNFMRMRERIQATRPSSTQLHHMISERRRREKLNENFQALRALLPTGTKKDKASILTTAKETLSSLTAEIDKLNKRNQELTSLLPPAKETSTEETKAIILPSNERFHVQISDAPQPSSSEERMVDLQVAVRGQISQVDALIRLLEFLKKAQNNVNLVSMDANTHFAEGNTLNQLTFRLRIVQGSEWDESAFREAVRRVVGDLEQSQVDQQL* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1506 522 MobiDBLite consensus disorder prediction 162 183 - -
Dod03g1506 522 Gene3D - 327 401 IPR036638 GO:0046983
Dod03g1506 522 Coils Coil 367 394 - -
Dod03g1506 522 Pfam Helix-loop-helix DNA-binding domain 332 377 IPR011598 GO:0046983
Dod03g1506 522 CDD bHLH_AtbHLH_like 333 384 IPR045239 -
Dod03g1506 522 SMART finulus 334 383 IPR011598 GO:0046983
Dod03g1506 522 Coils Coil 334 354 - -
Dod03g1506 522 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 328 377 IPR011598 GO:0046983
Dod03g1506 522 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 4 513 IPR044658 -
Dod03g1506 522 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 328 393 IPR036638 GO:0046983
Dod03g1506 522 MobiDBLite consensus disorder prediction 202 224 - -
Dod03g1506 522 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 4 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1506 Dod-Chr3 20559970 20564506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1506 15 513 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 43.389 3.93e-104 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod03g1506 HLH 3.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1506 - - gmx:100807098 667.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2355 05 49855510 49860578 Dod03g1506 03 20559970 20564506 PCT