Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1492 ATGATACCAACTTACCGTTATTCGGTATCTTCTCCTATGCCTTTTGATCTAAATGAAGATCAAAGCCATCAACTCTTCACTACAAACCAAAACCATAACCTCTCTTCTTCTTCTTCTTCTTCTTCTCTATCGTGTCCTATACTCTTCAACCCGGATAAGGATCAAGGAGGATCTTACTGTTGGGAAGAACCAAAGCAGTTACAAAGTGATGGAGAGGCTGAGAAGATTATTCCTTCTAGCGGATCATGCTGGGATCACCCAGAAGCAGAAAAGAATGAAAACAACAGCGACCTCAAGCTGAAAGTTTGGAAGAAAAAAGATGGGAATGAAAATCTTCAAGCTGAGGATGGGTCAGTGAAGTGGATGCCTTCAAAGACAAGGATGATGGTACCGGATCAAACGGGTTCCGGTACGGCAAGCAACTCCAAGAACAAGTTTGAAGAGCCAAAGCAGCCACTATCACCTCTAGGAACTGATGATAATAGCAGCAACAATTCTTCAAACCACAGCAATATCACTGTTAGGGTTTGCTCTGATTGTTACACCACTAAGACCCCTCTATGGAGGAGTGGACCTAGAGGTCCTAAGTCTCTTTGCAATGCCTGTGGGATTCGACAAAGGAAGGCGAGACGAGCCATGGCTGCGGCCGCAGCCGCAGCATCAGCAGATGGTACAATTCTCATGGCTGCTGAGACATCTGATGGTGTGAAGGGAAAGAAATTGCACAAGAAAGAGAAGAAACTGAAAGCTGAGTGTGCACCACAGATGAAAAAGAAGCGCAAACTTGGAACCAAGCCATCTAGAGGTAGAAAGAAGTTTGGTTTTGAGGATTTGACAATAAGTTTGAGTAAGAACTTGGCTTTGCAAGTGTTCCCTCAAGATGAGAAAGAGGCTGCAATCCTGCTCATGGCTTTATCTTATGGCCTGCTTCATGGCTTTCCCTCAGATCGTTACTTAGATTTATGA 966 0.442 MIPTYRYSVSSPMPFDLNEDQSHQLFTTNQNHNLSSSSSSSSLSCPILFNPDKDQGGSYCWEEPKQLQSDGEAEKIIPSSGSCWDHPEAEKNENNSDLKLKVWKKKDGNENLQAEDGSVKWMPSKTRMMVPDQTGSGTASNSKNKFEEPKQPLSPLGTDDNSSNNSSNHSNITVRVCSDCYTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAAAASADGTILMAAETSDGVKGKKLHKKEKKLKAECAPQMKKKRKLGTKPSRGRKKFGFEDLTISLSKNLALQVFPQDEKEAAILLMALSYGLLHGFPSDRYLDL* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1492 321 MobiDBLite consensus disorder prediction 129 148 - -
Dod03g1492 321 SMART GATA_3 171 222 IPR000679 GO:0006355|GO:0043565
Dod03g1492 321 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 172 211 - -
Dod03g1492 321 Pfam GATA zinc finger 177 210 IPR000679 GO:0006355|GO:0043565
Dod03g1492 321 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 312 - -
Dod03g1492 321 Gene3D - 168 225 IPR013088 GO:0006355|GO:0008270
Dod03g1492 321 MobiDBLite consensus disorder prediction 123 169 - -
Dod03g1492 321 MobiDBLite consensus disorder prediction 155 169 - -
Dod03g1492 321 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 1 312 - -
Dod03g1492 321 MobiDBLite consensus disorder prediction 70 99 - -
Dod03g1492 321 ProSiteProfiles GATA-type zinc finger domain profile. 175 207 IPR000679 GO:0006355|GO:0043565
Dod03g1492 321 CDD ZnF_GATA 176 204 IPR000679 GO:0006355|GO:0043565
Dod03g1492 321 ProSitePatterns GATA-type zinc finger domain. 177 202 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1492 Dod-Chr3 19900544 19902234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1492 118 312 C2C2-Gata Transcription Factor Family AT4G26150 40.807 8.38e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dod03g1492 GATA 1.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1492 - - gmx:100780875 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2336 05 49612496 49614404 Dod03g1492 03 19900544 19902234 PCT