Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1487 ATGGAAGATAATGAAGCATGCATCACAGGTCTAACTCTTGGGCTTGGAATTGAAGGGTATGTACCAAAGGAGGAGAAGCAGAAAAAGGCGAACAAGCCTGTGCCTTCCCTGGACCTAACCTTTGAGCTTTGTCCAAAAGGAGAAGAAGCCATTGGTGTGAATAATAACAGTCATCATCATGATGAGCCTGGTGAAGGATTCCGTTTGAAGAGAACAACCGATGAAGGACACCACCAGCAAGAAACAAATGAAAAGAGCAATGATAACACCAATGACAAGAACTGCAGCAGAAAGAAACTGAGGCTCACAAAGGAGCAGTCAGCCATGCTTGAAGAAAGCTTCAAGCTGCACACCACTCTTGGCCAAGCTCAGAAACAGGCTCTTGCTGAGCAATTGAATTTAAAGCACAGGCAGGTCGAGGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAGCTGAAACAAACAGAGGTGGATTGCGAGTTCCTGAAGAAATGTTGTGAAAAATTAACCAATGAGAACATAAGGTTGAAGAAGGAACTGCAGGAGCTACGCGCACTAAAAGTTGAACCATCTTTGTACATTCAACTCGCCAAGGCTGCAACCCTGACCTTATGTTCATCTTGTGAGGAGCTATTGAAGCCTAATGAAGAAAAAGATGCTGTCATTTCCGATGTGGTCCAAAACAACAATCACAACATGGAGAGCAGCGTAGAGAATTAG 720 0.4417 MEDNEACITGLTLGLGIEGYVPKEEKQKKANKPVPSLDLTFELCPKGEEAIGVNNNSHHHDEPGEGFRLKRTTDEGHHQQETNEKSNDNTNDKNCSRKKLRLTKEQSAMLEESFKLHTTLGQAQKQALAEQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTNENIRLKKELQELRALKVEPSLYIQLAKAATLTLCSSCEELLKPNEEKDAVISDVVQNNNHNMESSVEN* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1487 239 Pfam Homeodomain 97 151 IPR001356 GO:0003677
Dod03g1487 239 SUPERFAMILY Homeodomain-like 84 154 IPR009057 -
Dod03g1487 239 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 57 226 - -
Dod03g1487 239 CDD homeodomain 97 154 IPR001356 GO:0003677
Dod03g1487 239 MobiDBLite consensus disorder prediction 53 97 - -
Dod03g1487 239 PANTHER - 57 226 - -
Dod03g1487 239 ProSiteProfiles 'Homeobox' domain profile. 93 153 IPR001356 GO:0003677
Dod03g1487 239 SMART HOX_1 95 157 IPR001356 GO:0003677
Dod03g1487 239 SMART halz 153 196 IPR003106 GO:0006355|GO:0043565
Dod03g1487 239 MobiDBLite consensus disorder prediction 51 97 - -
Dod03g1487 239 ProSitePatterns 'Homeobox' domain signature. 128 151 IPR017970 GO:0000981|GO:0006355
Dod03g1487 239 Coils Coil 152 189 - -
Dod03g1487 239 Gene3D - 89 158 - -
Dod03g1487 239 Pfam Homeobox associated leucine zipper 153 186 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1487 Dod-Chr3 19832894 19834478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1487 92 223 Homeobox Transcription Factor Family AT4G16780 63.636 7.27e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dod03g1487 Homeodomain 3.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1487 K09338 - gmx:100790522 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2324 05 49530700 49532921 Dod03g1487 03 19832894 19834478 PCT