Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1473 ATGGCCAACGCGGAAGTGAAAGTAGTGGTTCCCGAATCGGTGTTGAAGAAGCAAAAGAGGAGCGAGGAGTGGGCTCTGGCCAAAACCCAGGAGCTCGAGGCCGCAAAGAAAAAGAGGTCCGAAACGAGGAAATTGATCTTCAACAGAGCCAAGCAGTACGCAAAGGAATACGATGAGCAAGAAAAGGAGCTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGCGGGTTTTATGTCGACCCTGAAGCTAAGCTTTTGTTCATCATCAGGATCCGTGGTATCAATGCCATGCATCCAAAAACAAGGAAGATTCTGCAGCTTCTGCGTTTGAGACAGATCTTCAATGGCGTCTTTCTCAAGGTTAACAAAGCAACCATCAATATGCTGCACAGGGTAGAGCCTTATGTCACCTATGGGTACCCTAACTTGAAGAGTATAAAAGAACTAATTTACAAGAGGGGCTATGGAAAAGTTGACAAGCATAGAATTGCTTTGACAGACAACTCTATCATTGAACAGACTTTGGGGAAGCATGGAATTATTTGCATTGAAGATCTGATCCATGAGATAATGACTGTTGGACCTCACTTCAGAGAGGCAAACAACTTCCTGTGGCCATTCAAGCTCAAGGCTCCCTTGGGTGGTTTGCAGAAGAAAAGAAACCATTATGTTGAAGGAGGTGATGCTGGTAACAGGGAAGGTTACATAAATGAGCTCATTAGAAGGATGAATTAA 735 0.4449 MANAEVKVVVPESVLKKQKRSEEWALAKTQELEAAKKKRSETRKLIFNRAKQYAKEYDEQEKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLHRVEPYVTYGYPNLKSIKELIYKRGYGKVDKHRIALTDNSIIEQTLGKHGIICIEDLIHEIMTVGPHFREANNFLWPFKLKAPLGGLQKKRNHYVEGGDAGNREGYINELIRRMN* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1473 244 PANTHER 60S RIBOSOMAL PROTEIN L7 5 244 IPR039699 -
Dod03g1473 244 Gene3D - 190 244 IPR036919 -
Dod03g1473 244 Gene3D - 85 189 IPR036919 -
Dod03g1473 244 Coils Coil 43 74 - -
Dod03g1473 244 SUPERFAMILY Ribosomal protein L30p/L7e 85 244 IPR036919 -
Dod03g1473 244 TIGRFAM uL30_euk: 60S ribosomal protein uL30 11 244 IPR005998 GO:0000463|GO:0003735|GO:0022625
Dod03g1473 244 CDD Ribosomal_L7_archeal_euk 85 244 IPR035808 -
Dod03g1473 244 PANTHER 60S RIBOSOMAL PROTEIN L7 5 244 - -
Dod03g1473 244 Pfam Ribosomal protein L30p/L7e 86 136 IPR016082 -
Dod03g1473 244 Pfam Ribosomal L30 N-terminal domain 10 81 IPR012988 -
Dod03g1473 244 ProSitePatterns Ribosomal protein L30 signature. 104 136 IPR018038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1473 Dod-Chr3 19506509 19510721 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1473 1 244 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 84.426 1.80e-156 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1473 K02937 - gmx:100500011 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1473 03 19506509 19510721 Dod03g1473 03 19506509 19510721 ECH