Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1462 ATGGAGAATATTGGTGAGGAGTACAAGCATTATTGGGAGACCAACATGTTCCTCCATACCCAAGAGCTTGACAGTTGGGGATTGGACGAGGCCTTATCTGGGTACTATGATTCGAGCTCCCCAGATGGTGCTGCTTCGTCGGCGGCATCTAAGAACATTGTCTCCGAGAGGAATAGGAGGAAGAAGCTCAATGAAAGGCTTTTCGCACTTCGATCGGTGGTCCCCAACATTAGCAAGATGGATAAGGCTTCGATTATTAAGGATGCAATTGAGTATATCCAGCAATTGCATGAGCAAGAGAAGATTATCCAAGCTGAGATAATGGAGCTTGAGTCTGGGATGCTCAAGAAGAATCCAAGCTATGACTTTGAGCAGGAGCTCCCTGTGTTGCTGAGGTCCAAGAAGAAGAGAACAGAGCAGCTATATGATTCTGTCAATTCTAGAAACTCCCCAATTGAAGTCCTTGAGCTCAGGGTTACATACATGGGAGAGAGGACAATTGTGGTTAGCTTGACATGCAGTAAAAGAACAGACACGATGGTAAAACTGTGCGAGGTGTTCGAATCTTTGAAGCTCAAGATCATCACTGCTAATATTACTTCCTTCTCAGGCAGGCTTTTGAAGACAGTCTTCATTGAGGCGGATGAAGAAGAGAAAGATCTTTTGCAGTTAAAGATCCAAACAGCAATTCAAGCCCTTAATGATCCTCTGAGCCCTATGAGCATTTGA 729 0.4458 MENIGEEYKHYWETNMFLHTQELDSWGLDEALSGYYDSSSPDGAASSAASKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIEYIQQLHEQEKIIQAEIMELESGMLKKNPSYDFEQELPVLLRSKKKRTEQLYDSVNSRNSPIEVLELRVTYMGERTIVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGRLLKTVFIEADEEEKDLLQLKIQTAIQALNDPLSPMSI* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1462 242 Coils Coil 212 232 - -
Dod03g1462 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Dod03g1462 242 PANTHER TRANSCRIPTION FACTOR BHLH35 1 236 - -
Dod03g1462 242 Pfam Helix-loop-helix DNA-binding domain 54 97 IPR011598 GO:0046983
Dod03g1462 242 Gene3D - 44 112 IPR036638 GO:0046983
Dod03g1462 242 SMART finulus 53 102 IPR011598 GO:0046983
Dod03g1462 242 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 236 - -
Dod03g1462 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 112 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1462 Dod-Chr3 19236971 19245704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1462 1 213 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 66.514 1.43e-88 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod03g1462 HLH 4.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1462 - - gmx:100817978 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2297 05 49189610 49195748 Dod03g1462 03 19236971 19245704 PCT