Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1461 ATGGCGACGGAGCAGACGAAGCTGAGCGTTCTGGTGAGCCTGTTCAACTGGACGCAGAGGGCCAAGTCGCCGGCGAAGAAGCGCGCCAAGCTCCGCAAGTTCCTGGACTCCTTCTGCTCCGCCGACCGCAACTTCTTCCCGGCGATTCGGCTCATCCTCCCAAACCTGGACCGCGAGCGAGGCTCCTACGGCCTCAAGGAGTCCGTCCTCGCCACCTCCCTCATCGACGCCCTAGGCATGTCCAGGGACTCCGACGACGCCCTTCGCCTCATCAATTGGCGCAAAGGCGGCAAATCTACCGGCGCTAATGCCGGCAATTTCGCCCTCGTTGCTGCCGAGGTGCTGCAGCGGAGGCAAGGGATGGCTTCGGGGGGATTGACAATAAAGGAGGTAAATGACTTGCTTGATCAGCTGGCTTCCAGCGAAAACAGGGCTGAGAAGACTTCGGTTCTTTCTACCCTTATCCAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAATCCTCAAAGATTTAAAGCTTGGAATTAGTGAAAAAAGCATTTTTCATGAATTCCATCCAGATGCTGAAGACTTGTTTAATGTCACATGTGACTTAAAATTAGTTTGTGAAAAACTGAGGGATCGAAATCAACGTCATAAGCGGCAGGATATTGAAGTTGGAAAAGCTGTGCGCCCTCAGTTAGCTAAGCGAGTTGCTAATGCAACTGAAGCATGGAAGAAGCTTCATGGGAAGGAAGTGGTTGTTGAGTGCAAATTTGATGGAGACCGCATTCAGATTCATAAAAATGGAACAGAGATACATTTCTTTTCAAGGAACTTTCTTGATCATTCTGAATATGCACATGCTATGTCAGAAATCATAATGCAAAACATTCTTGCAGATAGGTGTATACTTGATGGTGAAATGTTGGTCTGGGACACTTCTATGAATCGTTTTGCTGAGTTTGGCTCAAACCAGGAAATAGCCAAGGCAGCAAGGGATGGACTTGATAGTGATAGACAGTTATGTTATGTTGCATTTGATATCCTTTATTTTGGAGATACTAGTGTAATTCACCAAACTTTAAAGGAACGGCATGAGATTCTCTGTAAAGTTTTGAGGCCATTGAAGGGTCGCTTGGAAATTTTAGTACCTGATGGTGGTCTTAACAGTCATTGCTCTTCTGGTTGTTGGTCATTTATTGCTCATAATGTGGATGAAGTGGAGAGATTTTTCAAAGAAACAATAGAGAATAGAGATGAGGGAATTGTTGTGAAAGACCTTGGTTCCAAGTGGGAACCTAGTGATCGCAGCGGAAAGTGGCTAAAATTGAAGCCTGAGTACATTCAAGCTGGTTCTGATCTGGATGTACTTATCATAGGGGGCTACTATGGCTCTGGACGACGTGGTGGAGAGGTTGCTCAGTTCTTGGTGGGCCTTGCAGAGCGTCCATCCTCAAATATACATCCCAAGCGATTTATCTCCTTTTGCAGAGTTGGTACTGGACTTACTGATGATGAGCTTGATGCTGTAGTAACCAAACTAAAACCTTACTTCAGAAAGTATGAATATCCAAAGAAGAGGCCGCCAAGTTTTTATCAAGTTACTAATCATTCAAAAGAAAGACCTGATGTATGGGTTGAGAGCCCAGAGAAATCGATTATTCTGTCTATAACCAGTGATATTCGAACTATAGAATCTGAGGTATTTGCTGCTCCCTACAGCCTGAGATTTCCTCGGGTTGACAGGGTGAGATATGACAAAGCTTGGCATGAATGCCTTGATGTGCAATCATTTATAGAACTAGTGCAGTCTAGTAATGGTACTACTCAGATGGATATGGCCAGCAAACAGGATAGCAAACCAAGACGAGCAAAGTCTTCTATAAGAGGAGAAAAGAAAAGCATGCCCATTGTTCCTTCTCATTTAATACAGACTGATGTTTCCAGTGTTAAGGGGGGCTCCTTGATATTTTCAAATATGATGTTTTACTTTATTAATGTGCCTCCATCTCATTCTCTTGAGTCCTTGCACAAGATGATTGCTGAAAATGGGGGAAATTTCTCGATGAATTTGAATAACTCAGTCACCCATCGTGTTGCGGCTGACAGCAAAGGATTTAAATTTGAAGCTGCAAAACGTCATGGTGATATCATTCATTATAGTTGGGTATTAGATTGTTATGCACAAAAGAAGCTTGTCAGCTTACAGCCAAAGTACTTCCTCTTCCTATCTGAAGGGACAAAGAAGAAGTTCCAAGAAGAAATTGATGAGTTCTCAGACTCTTACTTCTTGGATCTTGATCTTGGAGACCTCAAGCAGCTTTTAAGCAATATTCATAGGTCAGAAAACATCAGCACTGTTGATCATTACAGGAAGAAATACTGCCCAAAAGATAGGTGGTCTTTCTTTATTGGATGCTGCATTTATTTCCATGCTGCAGTAACCTCATTGAAAGGAGATTGGGAAGTACTATTGGGACTTGCTTTGAGAAGATTCAAGCTTGAAGTTCTCATGGGTGGTGGAAAAGTTACCGATAAGCTTACTTGTGCAACTCATTTAGTTGTCTTGTCAGTGCCAGGATATGATTCTGAATTTGAAGAAGAAATACAGAGAAGTTTTAATTCGGTAGAAAGAAGATTACTCCAGAGCAAGAGGTTGCATGTAGTTAAATCCCAGTGGTTTGAAGATTGTCTGGACAGTAACAAAAGATTACCGGAAGAAAGTTATAGCTTGAGGCCCAGTGTAATAGAAGAGTTGACTGCTGTAAATTGTGAACATGACTTGGCGTTGGAGGAGGCTCGTTTGGGTGGAGATAATGTAGAAGACCAAAATATGTCGTTCTCTGACAAGGAAAGTAAACAGAGAAGTGCAAAAGCTGCTCATGAAGACAGCATGGCCATGGTGTCACACGAGAAGGTTCGCCAAAGGAAAAGAGGAAGACCAGCGGGTGGAGGTATTAAAAATGCTAAAACTGCTTGCAACAAGGCTCAAAGAACACGGCCACACATTGTGAGAAAGCGAGCTAAAATATCCGAGTATGAATCAGATGAAAGTGATCCTGGTGACAAAAAACCACATGAGCAAGTGACTGACACAAGAGAAGAAAGTCTTGATCTTTACAAGAGACATTCAGATCCCCAGAAGACTGAGACACAGGCTAATGTCCAAGTTACTGAAACAGTTGGAAGTTCTGAACGAAACAAGGCATTGCAAGATTTGAAGGATACTGGTGAACCAGAAAGAATGTCTGTTCCAGAAATAGAAATGACTGATAGGCAGAATGACCAAAACAGTCGAGTGACTGAAAAACTTGAAATGTGGGATGATCCAGTGCAGGCCATGTTATTTAACATGATTCCTAGCCTTGCCACGAAGAAAGTTGAGGAAACTAAGGACCAAGATGTTGGAGAAAAGAAGCAAGCAGAAATTAAGCCAGCAGAAATCACTAATGCTGAGGCAGAGCCTACAACTACAAAGAAAAAGAAAGTCAGCTACAAGGACATTGCTGGTGAGCTGCTCAAAGATTGGTAG 3522 0.4296 MATEQTKLSVLVSLFNWTQRAKSPAKKRAKLRKFLDSFCSADRNFFPAIRLILPNLDRERGSYGLKESVLATSLIDALGMSRDSDDALRLINWRKGGKSTGANAGNFALVAAEVLQRRQGMASGGLTIKEVNDLLDQLASSENRAEKTSVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANATEAWKKLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFLDHSEYAHAMSEIIMQNILADRCILDGEMLVWDTSMNRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYFGDTSVIHQTLKERHEILCKVLRPLKGRLEILVPDGGLNSHCSSGCWSFIAHNVDEVERFFKETIENRDEGIVVKDLGSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAERPSSNIHPKRFISFCRVGTGLTDDELDAVVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWVESPEKSIILSITSDIRTIESEVFAAPYSLRFPRVDRVRYDKAWHECLDVQSFIELVQSSNGTTQMDMASKQDSKPRRAKSSIRGEKKSMPIVPSHLIQTDVSSVKGGSLIFSNMMFYFINVPPSHSLESLHKMIAENGGNFSMNLNNSVTHRVAADSKGFKFEAAKRHGDIIHYSWVLDCYAQKKLVSLQPKYFLFLSEGTKKKFQEEIDEFSDSYFLDLDLGDLKQLLSNIHRSENISTVDHYRKKYCPKDRWSFFIGCCIYFHAAVTSLKGDWEVLLGLALRRFKLEVLMGGGKVTDKLTCATHLVVLSVPGYDSEFEEEIQRSFNSVERRLLQSKRLHVVKSQWFEDCLDSNKRLPEESYSLRPSVIEELTAVNCEHDLALEEARLGGDNVEDQNMSFSDKESKQRSAKAAHEDSMAMVSHEKVRQRKRGRPAGGGIKNAKTACNKAQRTRPHIVRKRAKISEYESDESDPGDKKPHEQVTDTREESLDLYKRHSDPQKTETQANVQVTETVGSSERNKALQDLKDTGEPERMSVPEIEMTDRQNDQNSRVTEKLEMWDDPVQAMLFNMIPSLATKKVEETKDQDVGEKKQAEIKPAEITNAEAEPTTTKKKKVSYKDIAGELLKDW* 1174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1461 1173 SUPERFAMILY BRCT domain 653 738 IPR036420 -
Dod03g1461 1173 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 252 260 IPR016059 GO:0003909
Dod03g1461 1173 Gene3D BRCT domain 664 777 IPR036420 -
Dod03g1461 1173 MobiDBLite consensus disorder prediction 1124 1142 - -
Dod03g1461 1173 MobiDBLite consensus disorder prediction 932 969 - -
Dod03g1461 1173 ProSiteProfiles ATP-dependent DNA ligase family profile. 331 478 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Dod03g1461 1173 Gene3D DNA ligase/mRNA capping enzyme 222 443 - -
Dod03g1461 1173 Pfam DNA ligase N terminus 10 188 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Dod03g1461 1173 Pfam ATP dependent DNA ligase domain 228 441 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Dod03g1461 1173 ProSiteProfiles BRCT domain profile. 837 908 IPR001357 -
Dod03g1461 1173 SMART BRCT_7 651 727 IPR001357 -
Dod03g1461 1173 SMART BRCT_7 804 898 IPR001357 -
Dod03g1461 1173 Pfam ATP dependent DNA ligase C terminal region 465 584 IPR012309 GO:0003910|GO:0006281|GO:0006310
Dod03g1461 1173 PANTHER DNA LIGASE 4 3 908 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Dod03g1461 1173 Gene3D - 1 220 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Dod03g1461 1173 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 63 599 IPR000977 GO:0003910|GO:0005524|GO:0071897
Dod03g1461 1173 MobiDBLite consensus disorder prediction 1003 1045 - -
Dod03g1461 1173 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 187 442 - -
Dod03g1461 1173 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 98 211 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Dod03g1461 1173 MobiDBLite consensus disorder prediction 1065 1096 - -
Dod03g1461 1173 Pfam DNA ligase IV 744 775 IPR021536 GO:0003910
Dod03g1461 1173 ProSiteProfiles BRCT domain profile. 649 737 IPR001357 -
Dod03g1461 1173 MobiDBLite consensus disorder prediction 1124 1159 - -
Dod03g1461 1173 MobiDBLite consensus disorder prediction 613 627 - -
Dod03g1461 1173 MobiDBLite consensus disorder prediction 606 628 - -
Dod03g1461 1173 CDD Adenylation_DNA_ligase_IV 216 446 IPR044125 GO:0005524
Dod03g1461 1173 CDD OBF_DNA_ligase_IV 448 592 - -
Dod03g1461 1173 SUPERFAMILY BRCT domain 787 911 IPR036420 -
Dod03g1461 1173 Gene3D - 444 605 IPR012340 -
Dod03g1461 1173 MobiDBLite consensus disorder prediction 1046 1064 - -
Dod03g1461 1173 Gene3D BRCT domain 796 908 IPR036420 -
Dod03g1461 1173 Coils Coil 128 148 - -
Dod03g1461 1173 MobiDBLite consensus disorder prediction 932 1096 - -
Dod03g1461 1173 ProSitePatterns ATP-dependent DNA ligase signature 2. 417 441 IPR016059 GO:0003909
Dod03g1461 1173 Pfam BRCT domain, a BRCA1 C-terminus domain 651 734 IPR001357 -
Dod03g1461 1173 SUPERFAMILY Nucleic acid-binding proteins 449 600 IPR012340 -
Dod03g1461 1173 CDD BRCT_DNA_ligase_IV_rpt1 653 739 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1461 64 601 Core DNA Replication Machinery Family AT1G08130 24.786 9.15e-33 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1461 K10777 - gmx:100816002 1870.51