Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1442 ATGCAAGTGACGCCGCGTGAATTTCCTAAAAGGGTAGAAAGGCTTTTCCCGATTGAAGAATCAGAAGGGGATTCTGCCTCTCCGGGTGGGACTAGTACTTTGACGAAATTGAAATCCACAGCATCCTCAATTTCGTCGAGGAAAAGATGGATGAGGGACAGAGATTTGATGAGCCTCATGTTGAGTTACCCTCTGAGAATAGCAAATGATTGTTGGGCGTGTGAGCAGTATGATGAGAAGCTACTCAGGTATTTTGAAGGACTTATACCAATGGAGATATGGGGCGCAGAAAAAGGTTACAGGACCTGCAGCTCCATCTTGATCAATGAAGCAGAGACAGGCTTGATTCCAGAAGCTATTCTCAATTTAGCTTCTGATCTTGCTGTTCACCAGCTCATGCAAACATTGCTTTCCATTTCTAAACATCAACACCATCAACACCCGCACCGTATCAATTACATCAGGTTATCGACCAGAAGCGATCTTGAAAAAAGAATAGTGATGGCAAAAATAGAAGCGGCATTGAAAGACAACCTTGATGTTCTTAATTCATTTTGGGGAACGCTAAGTGTTGACGCCTCCATGTATCCAACCGCAAGAGATGTCTGTCAGCATCTTGAGCTTCCAACGATTGAAGATGATGATGATGACATTTCGTGCACCAGACTTATTGAGGAAGAGATGTCAACCAACAGGTATCTAGTGCTTCTGGCAGATAGGGATGGTGAGGAAGTCGTAGATCTTTGCAAATTGGGTTTTGCTAAAACTACACTTTCAGGAGTTTTGGTGCTCATTACCACTGAATTAGCAACACAAGCTACAGATGAATTCATAGCGGAATTAATGGACTTGGAAATATGGACTAAGAGTCATTTACTGCCATGGCAAGTATTCTGTTACAATGTGGGGCGAGAGGTTGTATATTCATCTGGTGCCACCCTGGCAACTGCGGTGCGTATAGTTGAGGAGTGCCGTGGCCACCTTCTTGCCATTGTCCTTGTGGCAAAGTGGTTGTTGAGGAATTCCCAAGATGTCAAACACTGGGAACTTGCTCTCCATAAAATGAGTTACACTAATCCGTCCTATGATATTAATGGTGGTCTGAGCAGGGTCATGATGAATATATTTATGAACTTGGTCTGGGATGGTATGAACAAGACACTTAAGCATTGCCTTGTACGCTGTTTGTTTATCCCTGATATCAAAGATGCGAAAGATGATTACGGGGTGATGAATGATTGGATTTCTTCTCTCTTCATGGATGCTGAAGAAGCAAGAAATAATCTGAGACAACTTGTGGACTATTGTGTCCTCCTTCAAGTGAATGCCGCTGGAGATGGAATCAAGAGGTATATCAGATTGCCAGAAGAAACCTACGAGATTGTGGAAAAATTACACAATATAGACCCGATGCTCATAAAGAAAGCAGGGGAAGTCATTGAAGTAGCCACCATCGAGGGCTGGCAAAGTGTTGTACAGATTGAACTAGTAGACGCTAAATTGTCTGAGCTACCATTGTCTCCAATTTGGCAAGACATCACGGTGTTAGTGTTACAAGGCAATGCTGATTTGACCAAAGTTCCGCCGTCCTTTTTCGACCACATGTGTATGCTTCGCATCCTGGACTTATCCTACACCAGTGTAAGGGAACTACCAAGTTCGTTTTTCAATCTGGGGCAACTTAGAGAACTGTATCTGAAAGGCTGTGAATGCTTCATGAAATTACCACCAGAAATTGGAAAATTGCAAAAACTTGAGACGCTTGATCTTGAAGAAACCCAGATTATACATTTGCCAAACGAGTGTCAACAGCTGACCAACATGCAAAGCTTGATCCTTTACTTTTACGAATATCGTGGCAAGAAGAATAAGCCGTATTCCTGCTCAACGATTATTCCTTCTGGGGTAATATCAAAACTCAAGGGGCTGAAACATTTAAGCATTGATGTGAACCCTGATGATGAGCGGTGGCATCAGAATGTACAATTCATCCTACCAGAAATATTGGGATTAGAGTGTTTACAAACTCTTAGCATATATATCCCACACTTGGAACTTTTGAAGCTCATACCAGTTCACATTTTTGAAGCTGATTTCAGGTTCATAGTTGGTTGCCATATGCAGCGGATTATATCAAGCATACCACCTGCCATTGATGTAAAATTTAAAAAAAGTGATCATAGCTTAAAATTTGTAAAAGGTGAGAGTGTCCCACCTGAAATCAAAATGCTTCTTAGACATAGCAAGGCCCTCTTCTTGGATCGACATTTCACCGTGAAGAATCTGTCTGAATTTGAAATGAGAAACTTAGAACAACTGCGGGTGTGCATATTGTCAGAATGTAAAGAGATGCAGACAATTGTTGGAGCAAGACACTCAGATGGCAATGATGATGCGCTTTCACGTCTGCTATTCTTGAGTGTATCCCACATGAAGAATCTAAGAAGTATCTGGGAGGGACCAGCTCCTACTCGTTGCTTACTTGGTATGCTGCAGTTTTTGTCATTGCAGAGTTGTCCCAAGTTAACGGTTCTTTTCTCTCTTAATTTTTTGGGAAACCTATCCTTGTTGAAGGAGCTTTTAGTCAAAGACTGTCCCAAATTAAGTGCCTTAATAAGCCATGAATCATCCAAGAACAACAAATATACTTTCCTCCCGAAATTGAGGAAGCTATCACTTCTCCATCTTCCTGAACTGACTAGCATTTCGAGTGGGTTTCCCATTGGACCTGGTATAAAAGAAATGGCCTTTTATGGCTGTCCAAAGCTGTGTAGTCTTTCAAGGAATGAATTGCTAAGCAAGGAACTGATAGCAATCAAAGGAGAAATCAACTGGTGGAAGGCGCTAAATGATCTACCATCCAAGTTTGACAGAATTTTTTCCCCAGTTCATGAAGAGGCTGACTTGGTTAAGCAGTTAGGTATATATAATGATGACAATGTTGATAGCGATCCAGGTAGCTCAGTGGTTAAGCTATCACAGCCCACATGGTTTGCAACTCCAACATCAAATTCACCAGCTTTGAGCGATCAGGATTCCATGGTCAAAACGCAGAGTACAGGTTGCGAGAGAGAAGTGTCTCAAAGAGAAGATATGGAATACACGCTACCGGGTTTTCGTTTCTATCCTACGGAAGAGGAGCTGATTTCGTTCTATCTTCGCAAGAAGCTTGAAGGAGAGAGGGAGGAGGACAAGCAGCAGGTTATACCAGTCATTGATATATACGACTATAGTCCAGCGCAACTCCCACAAATGTCAGGAGTTCAGGCAAGTCTGAGAGACACTGAGCAATGGTTCTTCTTCCTTCCGAGGCAAGAAAGTGAAGCCCGAGGACGGAGGCCAAAGGGGCTGACAACTACTGGGTACTGGCAAGCTACTGGGTCCCCTGGTTTTGTTTATTCTTCTTCTGATAACCGCGTCATCGGCATCAAAAAAACCTTGGTTTTCTATAGAGGAGGACCCCCCAACGGGAAGACAACCGAATGGAAGATGAACGAGTATAAAGCCATAGATGCCAAATCTGAACCGTCCTCTTCAAACAAGGCTGTTAGGCAGGAATTCAGCTTGTGCCGAGTGTATAAGATATCAAAACGCGTGAGGGCATTTGATAGAGGACCATCTCCAAGTTGGGACGTGTTTCCTAATAATTTTCAAAATGCTCAAGAGAACCAGAGGGTTTCAAGTTCAAAATCTCATGATTATCACAGCAGCAATCCTCGAATAAAAATGTTATTTTAA 3738 0.4251 MQVTPREFPKRVERLFPIEESEGDSASPGGTSTLTKLKSTASSISSRKRWMRDRDLMSLMLSYPLRIANDCWACEQYDEKLLRYFEGLIPMEIWGAEKGYRTCSSILINEAETGLIPEAILNLASDLAVHQLMQTLLSISKHQHHQHPHRINYIRLSTRSDLEKRIVMAKIEAALKDNLDVLNSFWGTLSVDASMYPTARDVCQHLELPTIEDDDDDISCTRLIEEEMSTNRYLVLLADRDGEEVVDLCKLGFAKTTLSGVLVLITTELATQATDEFIAELMDLEIWTKSHLLPWQVFCYNVGREVVYSSGATLATAVRIVEECRGHLLAIVLVAKWLLRNSQDVKHWELALHKMSYTNPSYDINGGLSRVMMNIFMNLVWDGMNKTLKHCLVRCLFIPDIKDAKDDYGVMNDWISSLFMDAEEARNNLRQLVDYCVLLQVNAAGDGIKRYIRLPEETYEIVEKLHNIDPMLIKKAGEVIEVATIEGWQSVVQIELVDAKLSELPLSPIWQDITVLVLQGNADLTKVPPSFFDHMCMLRILDLSYTSVRELPSSFFNLGQLRELYLKGCECFMKLPPEIGKLQKLETLDLEETQIIHLPNECQQLTNMQSLILYFYEYRGKKNKPYSCSTIIPSGVISKLKGLKHLSIDVNPDDERWHQNVQFILPEILGLECLQTLSIYIPHLELLKLIPVHIFEADFRFIVGCHMQRIISSIPPAIDVKFKKSDHSLKFVKGESVPPEIKMLLRHSKALFLDRHFTVKNLSEFEMRNLEQLRVCILSECKEMQTIVGARHSDGNDDALSRLLFLSVSHMKNLRSIWEGPAPTRCLLGMLQFLSLQSCPKLTVLFSLNFLGNLSLLKELLVKDCPKLSALISHESSKNNKYTFLPKLRKLSLLHLPELTSISSGFPIGPGIKEMAFYGCPKLCSLSRNELLSKELIAIKGEINWWKALNDLPSKFDRIFSPVHEEADLVKQLGIYNDDNVDSDPGSSVVKLSQPTWFATPTSNSPALSDQDSMVKTQSTGCEREVSQREDMEYTLPGFRFYPTEEELISFYLRKKLEGEREEDKQQVIPVIDIYDYSPAQLPQMSGVQASLRDTEQWFFFLPRQESEARGRRPKGLTTTGYWQATGSPGFVYSSSDNRVIGIKKTLVFYRGGPPNGKTTEWKMNEYKAIDAKSEPSSSNKAVRQEFSLCRVYKISKRVRAFDRGPSPSWDVFPNNFQNAQENQRVSSSKSHDYHSSNPRIKMLF* 1246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1442 1245 SUPERFAMILY NAC domain 1032 1194 IPR036093 GO:0003677|GO:0006355
Dod03g1442 1245 PANTHER PROTEIN LAP1-LIKE 377 959 - -
Dod03g1442 1245 Pfam NB-ARC domain 186 356 IPR002182 GO:0043531
Dod03g1442 1245 Gene3D Ribonuclease Inhibitor 460 700 IPR032675 -
Dod03g1442 1245 Gene3D Ribonuclease Inhibitor 723 941 IPR032675 -
Dod03g1442 1245 SUPERFAMILY L domain-like 481 933 - -
Dod03g1442 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 395 IPR027417 -
Dod03g1442 1245 PANTHER - 377 959 - -
Dod03g1442 1245 MobiDBLite consensus disorder prediction 19 38 - -
Dod03g1442 1245 Pfam No apical meristem (NAM) protein 1037 1168 IPR003441 GO:0003677|GO:0006355
Dod03g1442 1245 Gene3D NAC domain 1044 1200 IPR036093 GO:0003677|GO:0006355
Dod03g1442 1245 Pfam Leucine rich repeat 514 569 IPR001611 GO:0005515
Dod03g1442 1245 ProSiteProfiles NAC domain profile. 1035 1195 IPR003441 GO:0003677|GO:0006355
Dod03g1442 1245 MobiDBLite consensus disorder prediction 1222 1245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1442 Dod-Chr3 19014051 19019159 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1442 1038 1206 NAC Transcription Factor Family AT5G22380 57.396 1.44e-61 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dod03g1442 NB-ARC 1.9e-05 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1442 - - aip:107622712 1127.85