LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod03g1423	ATGGCTGGTGAGAAGGGTAGTATCACCCTGGAGGAGATCAAGAACGAGACTGTTGATCTGGAACGAATTCCAATTGAGGAAGTGTTCGAGCAATTGAAATGTTCCAGGGAAGGTTTGTCCTCAGAGGAAGGAGTCCACAGGCTCCAAATATTTGGACCAAACAAGCTAGAAGAGAAGAAGGAAAGCAAGATTCTCAAGTTTCTTGGGTTCATGTGGAATCCTCTGTCATGGGTCATGGAATCTGCAGCTGTAATGGCAATTGCTCTTGCTAATGGTGAAGGGCAGCCCCCAGATTGGCAAGATTTTGTGGGGATTGTTTGCTTGCTGGTGGTCAACTCCACTATCAGTTTCATTGAAGAAAACAATGCTGGAAATGCTGCTGCTGCCCTTATGGCTGGTCTTGCTCCTAAAACAAAGGTTCTCAGAGACGGAAGGTGGAGTGAGGAAGAGGCTGCAATTCTAGTCCCTGGAGATATCATAAGCATCAAGCTAGGTGACATCATACCCGCCGATGCTCGTCTTCTTGAGGGTGACCCGTTAAAGATTGATCAATCAGCTTTGACTGGAGAGTCACTTCCTGTGACCAAGAATCCTGGGGATGAAGTTTTCTCTGGCTCAACCTGTAAACAAGGTGAAATTGAAGCTGTTGTCATTGCAACTGGTGTCCACACATTCTTTGGGAAGGCTGCTCACCTTGTTGATAGCACCAACCAAGTTGGACATTTCCAGAAGGTTCTCACAGCCATTGGGAACTTCTGTATTTGTTCCATTGCTGTTGGTATGTTGGCTGAGATCATTGTCATGTACCCGATTCAGCACCGCAAGTACCGCGACGGAATCAACAACCTTTTGGTCCTCTTGATTGGAGGAATTCCCATTGCTATGCCAACTGTGTTGTCTGTGACAATGGCCATTGGGTCTCATAGGCTCTCTCAACAAGGCGCCATCACCAAGCGAATGACTGCCATTGAAGAATTGGCTGGTATGGATGTCCTTTGCAGTGACAAGACAGGAACACTCACCCTTAACAAGCTGAGTGTTGACAAGAACTTGATTGAGGTTTTTGCCAAGGGTGTGGAGAAGGATCATGTGGTCCTTCTTGCCGCAAGGGCTTCCAGGACTGAAAACCAGGATGCTATAGATGCCGCCATTGTTGGAATGCTTGCAGACCCAAAAGAGGCAAGGGCTGGAATAAGAGAGGTACACTTCTTACCATTCAATCCTGTTGACAAGAGAACTGCTTTGACATACATTGATTCTGATGGAAACTGGCACCGTGCGAGCAAAGGTGCTCCTGAGCAGATCATGATCCTGTGTAACCTCAGGGAAGATGCTAAGAAGAAGGTCCATGCTATTATTGACAAGTTCGCAGAAAGAGGGCTTCGTTCACTTGCTGTTGCAAGACAGGTAGTTCCTGAGAAATCAAAAGAAAGTGCTGGTGCTCCATGGGAATTTGTTGGCTTGTTGTCACTGTTTGATCCCCCTAGGCATGACAGTGCTGAAACCATTCGAAGGGCTCTCCACCTCGGTGTAAATGTCAAGATGATTACAGGTGATCAACTTGCCATAGCTAAGGAGACTGGCCGTAGACTCGGGATGGGAACAAATATGTACCCATCTGCTTCCTTGCTTGGTCAAGACAAAGACGCAAGTATTGCTGCACTTCCTGTAGAAGAGCTGATTGAGAAGGCAGATGGATTTGCTGGAGTATTTCCAGAGCACAAATATGAAATTGTGAAGAAGTTGCAAGAGAGGAAGCACATTTGTGGAATGACTGGAGATGGTGTCAATGATGCTCCTGCTTTGAAGAAGGCTGATATTGGAATTGCTGTTGCTGATGCCACTGATGCTGCAAGAGGCGCTTCTGATATTGTCTTGACTGAACCTGGATTGAGTGTCATTATTAGTGCTGTCTTAACCAGCAGAGCTATTTTCCAAAGAATGAAGAACTACACGATCTATGCAGTATCTATCACCATCCGTATAGTGTTTGGCTTCATGTTTATTGCACTGATCTGGAAATTCGACTTCTCTCCTTTCATGGTTCTGATTATCGCCATTCTAAATGACGGAACAATCATGACTATTTCAAAGGACAGGGTTAAGCCATCTCCCTTGCCTGATAGCTGGAAACTGAAAGAAATATTTGCTACTGGGATAGTGCTTGGAGGTTACTTGGCACTGATGACTGTTATATTCTTCTGGGCAATGAAAGAAACCACATTCTTCTCTGATAAATTTAAGGTTAGACCTCTGCACAACAGCACTCATGAAATGACGGCTGCTTTGTATCTACAAGTCAGTATAGTTAGCCAGGCTCTGATATTTGTAACCCGTTCGCGCAGCTGGTCCTACGTTGAGCGCCCTGGATTGCTTTTAATGAGCGCTTTTGTTATTGCTCAGCTGATTGCAACATTGATTGCAGTATATGCCAACTGGGGATTTGCAAAGATCAAAGGAGTAGGTTGGGGTTGGGCAGGAGTCATCTGGCTCTATAGTGTTGTCTTCTATGTTCCACTTGATTTCATGAAGTTCGCCATCCGCTACATTTTGAGTGGCAAGGCTTGGCTCAATCTGCTAGAAAGCAAGACTGCCTTCACCACCAAGAAAGACTATGGTAAGGAGGAGAGGGAAGCTCAATGGGCTCTTGCTCAGAGGACCCTTCATGGTCTCCAACCACCAGAGACTTCTAGCATTTTCAATGAAAAGAACAGCTACAGAGAATTGTCTGAGATTGCTGAACAGGCCAAGAGAAGAGCTGAAGTTGCAAGGCTTCGTGAGCTTCACACACTTAAGGGACACGTTGAATCCGTGGTGAAGCTGAAAGGTTTGGACATTGATACAATCCAGCAGCACTATACTGTGTGA	2868	0.4568	MAGEKGSITLEEIKNETVDLERIPIEEVFEQLKCSREGLSSEEGVHRLQIFGPNKLEEKKESKILKFLGFMWNPLSWVMESAAVMAIALANGEGQPPDWQDFVGIVCLLVVNSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWSEEEAAILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMLAEIIVMYPIQHRKYRDGINNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEELAGMDVLCSDKTGTLTLNKLSVDKNLIEVFAKGVEKDHVVLLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSDGNWHRASKGAPEQIMILCNLREDAKKKVHAIIDKFAERGLRSLAVARQVVPEKSKESAGAPWEFVGLLSLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQDKDASIAALPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGIVLGGYLALMTVIFFWAMKETTFFSDKFKVRPLHNSTHEMTAALYLQVSIVSQALIFVTRSRSWSYVERPGLLLMSAFVIAQLIATLIAVYANWGFAKIKGVGWGWAGVIWLYSVVFYVPLDFMKFAIRYILSGKAWLNLLESKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPETSSIFNEKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV*	956

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod03g1423	955	Pfam	E1-E2 ATPase	135	312	-	-
	Dod03g1423	955	Coils	Coil	906	926	-	-
	Dod03g1423	955	CDD	P-type_ATPase_H	38	845	IPR006534	GO:0008553\|GO:0016021\|GO:0120029
	Dod03g1423	955	PRINTS	H+-transporting ATPase (proton pump) signature	564	580	IPR001757	GO:0005215\|GO:0005524\|GO:0016021\|GO:0016887
	Dod03g1423	955	PRINTS	H+-transporting ATPase (proton pump) signature	592	608	IPR001757	GO:0005215\|GO:0005524\|GO:0016021\|GO:0016887
	Dod03g1423	955	PRINTS	H+-transporting ATPase (proton pump) signature	764	785	IPR001757	GO:0005215\|GO:0005524\|GO:0016021\|GO:0016887
	Dod03g1423	955	PRINTS	H+-transporting ATPase (proton pump) signature	449	467	IPR001757	GO:0005215\|GO:0005524\|GO:0016021\|GO:0016887
	Dod03g1423	955	PRINTS	H+-transporting ATPase (proton pump) signature	623	648	IPR001757	GO:0005215\|GO:0005524\|GO:0016021\|GO:0016887
	Dod03g1423	955	PANTHER	CALCIUM-TRANSPORTING ATPASE	2	935	-	-
	Dod03g1423	955	SUPERFAMILY	Calcium ATPase, transduction domain A	136	233	IPR008250	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod03g1423	Dod-Chr3	18564487	18574107	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod03g1423	9	955	Primary Pumps ATPases	AT4G30190	84.796	0.0	1653

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod03g1423	K01535		-	gmx:100804422	1739.93

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod05g2263	05	48761720	48768973	Dod03g1423	03	18564487	18574107	PCT

Showing 1 to 1 of 1 entries