Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1420 ATGGAGTGGGACAGCAATTCCGATCTCAGCGCCGATGACGACGACGCCTTCCTCCGCCGCCACGAAGACGATGACGAAGACGACGAGATTGGGCTTGGGCTTGGCCCGATTCCTTTCCCTGTGATCCAAACGGCGCCGTGCGGGTTCGTGGTCACGGACGCGCTTGAACCCGACCACCCTATCATTTACGTCAACACCGTCTTCGAGATGGTCACAGGTTACCGTGCCGAGGAAGTCCTCGGTCGCAACTGTCGTTTTTTGCAGTGTCGAGGTCCATTCGCTAAGAGAAGGCATCCATTGGTGGACTCAACAGTAGTTTCAGAAATCAGAAGATGCCTTGAGGAAGGGATTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTTATGAACAGATTGCGGCTGACACCTATATATGGAGATGATGAGATAACTCATGTCATTGGAATCCAGTTCTTCACAGAGGCAAACATTGATCTTGGTCCTGTTCCAGGTTCTACAATTAAGGAGTCTGCTAAATCATCAGATCAATTTCGGTCTGTGCTTTCCTCATTGCATCCTCTTCCGGTGGGGGACCGGAATGTGACACGTGGCCTTTGTGGGATATTGCAATTGAGTGATGAAGTACTGTGTCTCAAGATCCTTGCTCTTTTAACTCCAAGAGATATTGCATCCATTGGTTCTGTCTGTAGACGATTGTATGAGCTGACAAAAAATGAAGACCTATGGAGAATGGTATGCCAAAATGCATGGGGCAGCGAGACCACACGTGTTTTAGAGACTGTGCCTGGTGCAAGGAGACTTGGATGGGGTCGGTTGGCAAGGGAACTGACCACACTTGAAGCAGCAGCATGGAGGAAACTGACTGTTGGAGGTGCTGTTGAACCCTCACGCTGTAATTTTAGTGCTTGTGCAGTTGGTAATAGGGTTGTTCTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGACACCTTTGTATTGGATCTCAATTCTAGTAATCCTGAGTGGCAACACGTCCAGGTGAGCTCTCCTCCTCCTGGTCGTTGGGGCCACACACTTTCTTGTGTTAATGGTTCTCGCTTGGTTGTATTTGGGGGCTGTGGAAGACAAGGCTTGCTCAATGACGTGTTTGTTCTGGACCTGGATGCCAAGCCTCCAACTTGGCGGGAAATTTCTGGATTGGCACCTCCACTCCCTAGATCATGGCATAGTTCTTGTACTCTTGATGGTACTAAGTTGATAGTTTCTGGTGGCTGTGCTGATTCTGGAGTACTCTTGAGTGATACTTTCCTTCTTGATTTGTCGATGGAGAAACCTGTCTGGAGGGAGATACCGGTGACATGGACTCCACCTTCTCGTCTAGGCCACACACTATCTGTTTATGGTGGTAGGAAAATACTGATGTTTGGTGGTCTGGCCAAGAGTGGGCCTTTGCGTTTTCGGTCCAGTGATGTATTCACAATGGATTTAAGCGAGGATGAGCCATGCTGGAGATGTGTAACAGGGAGTGGAATGCCTGGTGCCGGAAATCCTGGGGGCATAGCTCCTCCTCCTAGACTTGATCATGTGGCTGTTAGTCTTCCAGGTGGGAGAATTCTGATATTTGGTGGGTCTGTTGCAGGCCTTCATTCTGCCTCCCAACTTTACATCCTTGATCCAACTGATGAGAAGCCTACATGGAGAATCCTAAATGTACCTGGGCGCCCTCCACGATTTGCTTGGGGACATAGTACATGTGTTGTTGGAGGGACGAGAGCTATTGTATTGGGTGGTCAAACTGGGGAGGAATGGATGCTAAGTGAACTCCATGAACTATCCCTGGCAAGTTCTGTCATATAG 1857 0.4879 MEWDSNSDLSADDDDAFLRRHEDDDEDDEIGLGLGPIPFPVIQTAPCGFVVTDALEPDHPIIYVNTVFEMVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLTPIYGDDEITHVIGIQFFTEANIDLGPVPGSTIKESAKSSDQFRSVLSSLHPLPVGDRNVTRGLCGILQLSDEVLCLKILALLTPRDIASIGSVCRRLYELTKNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSRLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEDEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSVI* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1420 618 ProSiteProfiles PAS repeat profile. 41 116 IPR000014 -
Dod03g1420 618 Gene3D - 482 616 IPR015915 GO:0005515
Dod03g1420 618 Gene3D PAS domain 40 166 - -
Dod03g1420 618 SUPERFAMILY Kelch motif 288 507 IPR015915 GO:0005515
Dod03g1420 618 TIGRFAM sensory_box: PAS domain S-box protein 58 154 IPR000014 -
Dod03g1420 618 PANTHER ADAGIO PROTEIN 1-LIKE 1 617 - -
Dod03g1420 618 SUPERFAMILY Kelch motif 447 612 IPR015915 GO:0005515
Dod03g1420 618 Pfam F-box-like 214 252 IPR001810 GO:0005515
Dod03g1420 618 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 617 - -
Dod03g1420 618 SUPERFAMILY F-box domain 197 267 IPR036047 GO:0005515
Dod03g1420 618 CDD PAS 45 147 IPR000014 -
Dod03g1420 618 Pfam PAS domain 46 155 IPR000014 -
Dod03g1420 618 Gene3D - 204 250 - -
Dod03g1420 618 SUPERFAMILY PYP-like sensor domain (PAS domain) 45 155 IPR035965 -
Dod03g1420 618 Pfam Galactose oxidase, central domain 364 413 - -
Dod03g1420 618 Pfam Galactose oxidase, central domain 302 352 - -
Dod03g1420 618 Pfam Kelch motif 459 510 IPR011498 GO:0005515
Dod03g1420 618 Pfam Kelch motif 526 573 IPR011498 GO:0005515
Dod03g1420 618 Gene3D - 281 481 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1420 Dod-Chr3 18446349 18456307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1420 48 156 AGC Kinase Gene Family AT5G58140 35.455 4.92e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1420 K12115 - gmx:100802828 1139.02