Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1401 ATGGAGGATGCTGAGAAGGTGGAGCAAGAGAAAGATATTAGAGGGGAAGAAGTGAGGTACCGTGGTGTGAGGAGGAGGCCATGGGGCAAGTATGGGGCAGAGATAAGAGACCCAACAAAGCCTACGGGAAGGGTATGGTTGGGGACATTTGATACAGCTGAAGAAGCAGCTAGAGCTTATGATCGTGCTGCCATTGGTTTGAGGGGTCCTCTTGCAATTCTCAATTTTCCTGATGAGTACCATTCTCATCTCCCTTTTGTTATGTCGTCGTCGACCTCATCATCATCATATTCTTCTTCTTCTACTACTCCTGCTACTACTACCGGCACCATTGGGGCAAGTTCTTCAACTGCACAACATAGGGAAGTCATTGAGTTTGAGTATTTGGACAACAAGGTGTTGGAAGACCTTCTTGAGGAAGAGAAGAATAGGAAGAAGGACTAA 444 0.464 MEDAEKVEQEKDIRGEEVRYRGVRRRPWGKYGAEIRDPTKPTGRVWLGTFDTAEEAARAYDRAAIGLRGPLAILNFPDEYHSHLPFVMSSSTSSSSYSSSSTTPATTTGTIGASSSTAQHREVIEFEYLDNKVLEDLLEEEKNRKKD* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1401 147 ProSiteProfiles AP2/ERF domain profile. 19 77 IPR001471 GO:0003700|GO:0006355
Dod03g1401 147 PANTHER ETHYLENE RESPONSE FACTOR 1 142 - -
Dod03g1401 147 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Dod03g1401 147 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Dod03g1401 147 MobiDBLite consensus disorder prediction 88 117 - -
Dod03g1401 147 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Dod03g1401 147 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Dod03g1401 147 Pfam AP2 domain 19 69 IPR001471 GO:0003700|GO:0006355
Dod03g1401 147 SUPERFAMILY DNA-binding domain 19 79 IPR016177 GO:0003677
Dod03g1401 147 PANTHER DNA-BINDING DOMAIN 1 142 IPR044808 GO:0003700|GO:0009873
Dod03g1401 147 CDD AP2 19 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1401 Dod-Chr3 18114540 18115289 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1401 16 145 AP2-EREBP Transcription Factor Family AT3G23230 53.846 6.32e-42 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod03g1401 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1401 - - gmx:100807295 177.178