Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1384 ATGGCTGAAATTCACTCCCACACTACTCCACCACCCACTATTAGCCCCACCATAAGCAAGCCATGCTGCCCTCCATCACAAACTTCTTCTACAGGTGGTTTAAATTTCATGGTTCTTTTGGCAGCAATTGTGTGTGCCTTCCTTTGTGCTCTTGGCCTAAACACCATGTTAAAATGTGTGGTACAATGTGCTAGCCGTGTACTCACTGAGCCTTTGCAATGGATTGCTTCTAGAAGGCTCAATTCAGGGCTCAAGAAGACAGAAATGGTTGCTTTGCCAACCTCAACTTATAGCCAGTCAGGGTCTCCATCATCTTCAGGGTCTTCTAGTTGTGCAATTTGTCTTGCAGATTTTTCAGATGGGGACAAGATAAGGTTCCTCCCAAAGTGCAATCACCGTTTCCATGTGGTTTGCATTGATAAGTGGCTGCTTTCCCACTCTTCTTGCCCAACATGCAGGAACCTCCTCAAGTCCGATGGTTCAGCACCCCCCTTGCATATTGTCGTAGCTTAG 513 0.4659 MAEIHSHTTPPPTISPTISKPCCPPSQTSSTGGLNFMVLLAAIVCAFLCALGLNTMLKCVVQCASRVLTEPLQWIASRRLNSGLKKTEMVALPTSTYSQSGSPSSSGSSSCAICLADFSDGDKIRFLPKCNHRFHVVCIDKWLLSHSSCPTCRNLLKSDGSAPPLHIVVA* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1384 170 Pfam Ring finger domain 110 153 IPR001841 -
Dod03g1384 170 SUPERFAMILY RING/U-box 110 159 - -
Dod03g1384 170 SMART ring_2 111 152 IPR001841 -
Dod03g1384 170 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Dod03g1384 170 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 22 164 - -
Dod03g1384 170 MobiDBLite consensus disorder prediction 1 22 - -
Dod03g1384 170 PANTHER OS06G0666500 PROTEIN 22 164 - -
Dod03g1384 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 158 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1384 Dod-Chr3 17838999 17839899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1384 35 163 C3H Transcription Factor Family AT3G10910 45.255 2.31e-32 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1384 - - gmx:100803003 226.483