Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1369 ATGAGTTCTTCTGAGGGTGGAGATGGTGGAGGGTCTGGCAAGGGGAAATCACCCTCTGTCATCACTTCATATCAAAATGCCCAATTGGAAGCGTTTTTCGTGCGGTGCCCACATCCAGATGAAACCCAGCAAAATCAATTAGCCAAGGATCTTGGACTTCAGCCCGCGCAAATAAAGGAGTGGTTTGAGAACAAGAGGACACAAACACAGAGTTCTCAACCTGAGCCGCAGTTTCCTACTCTAGACAGTTCACGTGATGCTCAGGCACCACCAGAACAAACAAGTGTGGAGAACCAAGCATGTCAAGATTATGATCTCCCACAAAGCACTGATCCAAATCATGAAGTTCCGAACTCATCACAATCACCGACCCGAAGTGATGTCTCTGATGCAGATGATTACCATAGGGAGAAAGCAACGATGTTAAAGACTGCTAAGGATGCCGTTAAAGAACTAGCTAAGCTCTTGCATACTAATGAGCCCTTATGGGTTAAGTCTTCACGTGATGAGAGATTTTCACTCGATCGTGAACAGTATCAGATAGTGTTTCCTAGGAATAGTAATCCTAATGTCTTCAAAACGCCCAACACCCGTGTTGAATCCTCGAAAGCTTCAATGATTGTGGATGGGGCTGCAAAGAAATTGGTTGAGGCATTATTAGATCCGGAAGAAATGACTGAGCTTTTCCCAACACTGATCCAAAGAGTAGAGATAATCAAAGAGTATGAAGTCGGACCAGTTGAAACTAAGGATGGAGCCTTGATATTGATGTATTTAGAATTGCACACACTTTCTCATCTAGTGCCATCTCGGAAGTACTTCGTCCTTCGATATTGTGAACAAATTCATGATTCCGGCATTTGGTTGATATCTGATGTGTCACTTCCTTCCTTCGGACAGAACCTCCCTCATTTACCCTCTTGGAAGCTTCCCTCTGGATGCTTGGTTCGTCAAATGCCTAATGAAAATTCTATGATGGTTGTTTGGGTTGAGCATGTGGAAGCGAATGATAGGCCCGAAACTAGCTTGATATACGAAGATCTTGTTAAAAACAATGTTCCATATTCAGCAGATATGTGGCTTTTGGTCCTTCAAAGAAGCTGTGAGAAATTAACTCACCACCAGTTAATCATGCCTGATGAAGCTGCTCAAGGTAGAACAGCAATCCCAATGGAAGGAAGGATGAGTTTGCTACATCTTTCTCATCGAATGCTTAAGGGCTTTAATGCAATTCTGGATACGACAGGCAAGCCTGAAATCACACAATTCTCTAGTCATCAATCAAACAACCATGGTACGGTTAAGTTCTCTCTTCGGAAGAACTCGGCACCAGGCCAACCAAAGGGCATGATTGCCACCCTTGTTACATCCATTTGGCTTCCGCTCACTCCTTTCTATGTCTTTCACATCCTCAGAGATGTTAGTAGGCGAAGTGAGTGGGATATTCTCTGCACTGGATGTTCAGCATTTGAGGTTGCAAAAGTCGGAACTGGAATCTATCGAGGCAACCGTGTTTCACTTATTCGGATGCAGCCCTGCAGCAGTCGAGATAACGAACTGGTGATACTTCAAGAATGTTCCATAGACCCGGTGCATTCGTACATTGTGTTTGCACCCATGGACATGCTGAGCATGCATTCCTTCATGAATGGGAGGGATGCTTCGTTCTACGAGATTCTCCCCTCAGGCTTCTCCATCACCGGAGATTCCGATTCATTCCTTGATTTGTGGCCGGAAGGTAGGGTTGAACATCGCAAGACAAGAGGAACACTCTTAACTGTGGGTTACCAGATGCTTGTTTCTGGCTCTGTGTCAACCAAAGACTTGAAGATGGATTGTTTGGCGAGGGCCAATGCCGTTTTCCGTTTAACAATCGATAAAGTAAAGAAGCTAGGTGTCGACCCGGGTTTCAGTTCGTTTATATTGGGAAGATCCTTGGCGTCCTCTTGGTTTTTCGAGCGGTGCCCACATCCTGATGAACCTCAGCAATATCAATTAGCCAAGGATCTTAGACTTCAGCCTGAACAAATAAAGGAGTGGTTTCAGGACAAGAGGCCACAAACGCAGATTTCTCAACCTGAGCCGCAGTTTCCTACTCTAGACACTTCACGTGATGTTCAGGTACCATGTGTGGAGAACCAAGCATGTCAAGATCATGATCTCCCACAAAGCGCTGATCCAAATCATGAAGTTCCGAACTCACGATCAACCGATGCAGCTGATTACCATAGAGAGAAAGCAAAGATGTTAAAGATTGCAAAAGCTGCCCATAAAGAACTAGTTAAGCTCCTGCGTGCTAAAGAGTCCTTATGGGTCAAGTCTTCACATAATGAGAGATTGTCTCTCGATCGGGAACAATATCAAAGAATGTTTCCTAGGAATAGTGATCCTAATGTCTTCAAAACACCCAATACCCGTGTGGAATCTTCGAGAGCTTCAATCACAGTGGACGGGGTTGCAAAGAAATTGGTTGAGGCATTGTTAGATCCGGAACAAATGACTGACTTTTTCCCAACATTGATTCAAAGAGTAGAGATAATCAAAGAGTATGAAGTTGGACCGGTTGAAACTAGAAGTGGAGCCTTGCTGTTGATGTATTTAGAATTGCACACTCTTTCTCATCTAGTGCCATCTCGGAAGTACTTTGTCCTTCGATATTGTGAACAAATTCATGATTCTGGTGTGTGGGTGATATCTGATGTGTCACTTCCCTCCTTCGGACAGAACCTCCCTCATTTACCCTCTTGGAAGCTTCCCTCTGGATGCTCGATTCGTCAAATGCCTAACGGAAGTTCTGCGATGGTTATTTGGGTTGAGCATGGGGAAGCGAATGATAGGCCCGAAACTAGCTTGATATATGAAGATCTTGTTGAAAACAATGTTCCATATTCAGCAGACATGTGGCTTTTGGCCCTTCACAGAAGCTGTGAGAAATTATCTCGCTACCAATTAATCATGCCTGATGAAGCTGCTCAAGGCAGGTCAGCAATCCCAATGGAAGGAAGGGTGAGTTTGCTGCATCTCTCTCATCGAATGGTTAAGAGCTTTTGTGCAATTCTGAACACAACAGGCAAGCCTGAAATCACAGAATTCTCTGGTCAATCAAACAATGATGTTGCAACTAAGTTGTCTCTTCGCAAGAACTTGGCACCAGGCCAACCAAAAGGCATGATTGCCAGCCTTGTTACCTCCATTTGGCTTCCTCTCCATCGTAACCATGTATTTCACGTCCTCAGAGGTGCGAGTAGGCGTAGTGAGTGGGATATTCTCTTCAGTGGACATTCAGCGTTTGAGGTTGCAAAAGTCGTGACTGGACTCTATCCTAGCAACCGCGTTTCAGTTATTCGGGCCTGCAGCAGTCGAAATAATGAACCGATGATACTTCAAGAATGTTCCATAAACCCGTTGCATTCGTACATTGTGTTTGCACCCATGGACAAGGTGAACTTGCATTCGTTCATGAATGGGAGCGATGCTTCGTGCTTCGAGATTCTCCCCTCAGGCTTCTCCATCACCGGAGATTCCGACTTATTCCTTGATTTACGGAAGAGAGGTAGGGTTGAACATCGCAAAACAAGTGGCACACTCTTAACTGTGGGTTACCAGACACTTGTTTCTGGCTCGGTGTCGACCAGAGACTTGAAGATGGAAGATCTGGCGAGGGCCAATACCTCTTTCCTCCTAACAGTCAATAAAATAAAGACTGTTCTGGGTTGTTAA 3720 0.4478 MSSSEGGDGGGSGKGKSPSVITSYQNAQLEAFFVRCPHPDETQQNQLAKDLGLQPAQIKEWFENKRTQTQSSQPEPQFPTLDSSRDAQAPPEQTSVENQACQDYDLPQSTDPNHEVPNSSQSPTRSDVSDADDYHREKATMLKTAKDAVKELAKLLHTNEPLWVKSSRDERFSLDREQYQIVFPRNSNPNVFKTPNTRVESSKASMIVDGAAKKLVEALLDPEEMTELFPTLIQRVEIIKEYEVGPVETKDGALILMYLELHTLSHLVPSRKYFVLRYCEQIHDSGIWLISDVSLPSFGQNLPHLPSWKLPSGCLVRQMPNENSMMVVWVEHVEANDRPETSLIYEDLVKNNVPYSADMWLLVLQRSCEKLTHHQLIMPDEAAQGRTAIPMEGRMSLLHLSHRMLKGFNAILDTTGKPEITQFSSHQSNNHGTVKFSLRKNSAPGQPKGMIATLVTSIWLPLTPFYVFHILRDVSRRSEWDILCTGCSAFEVAKVGTGIYRGNRVSLIRMQPCSSRDNELVILQECSIDPVHSYIVFAPMDMLSMHSFMNGRDASFYEILPSGFSITGDSDSFLDLWPEGRVEHRKTRGTLLTVGYQMLVSGSVSTKDLKMDCLARANAVFRLTIDKVKKLGVDPGFSSFILGRSLASSWFFERCPHPDEPQQYQLAKDLRLQPEQIKEWFQDKRPQTQISQPEPQFPTLDTSRDVQVPCVENQACQDHDLPQSADPNHEVPNSRSTDAADYHREKAKMLKIAKAAHKELVKLLRAKESLWVKSSHNERLSLDREQYQRMFPRNSDPNVFKTPNTRVESSRASITVDGVAKKLVEALLDPEQMTDFFPTLIQRVEIIKEYEVGPVETRSGALLLMYLELHTLSHLVPSRKYFVLRYCEQIHDSGVWVISDVSLPSFGQNLPHLPSWKLPSGCSIRQMPNGSSAMVIWVEHGEANDRPETSLIYEDLVENNVPYSADMWLLALHRSCEKLSRYQLIMPDEAAQGRSAIPMEGRVSLLHLSHRMVKSFCAILNTTGKPEITEFSGQSNNDVATKLSLRKNLAPGQPKGMIASLVTSIWLPLHRNHVFHVLRGASRRSEWDILFSGHSAFEVAKVVTGLYPSNRVSVIRACSSRNNEPMILQECSINPLHSYIVFAPMDKVNLHSFMNGSDASCFEILPSGFSITGDSDLFLDLRKRGRVEHRKTSGTLLTVGYQTLVSGSVSTRDLKMEDLARANTSFLLTVNKIKTVLGC* 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1369 1239 MobiDBLite consensus disorder prediction 718 738 - -
Dod03g1369 1239 CDD homeodomain 651 685 IPR001356 GO:0003677
Dod03g1369 1239 SMART HOX_1 14 76 IPR001356 GO:0003677
Dod03g1369 1239 SMART HOX_1 643 695 IPR001356 GO:0003677
Dod03g1369 1239 MobiDBLite consensus disorder prediction 58 132 - -
Dod03g1369 1239 SUPERFAMILY Bet v1-like 745 979 - -
Dod03g1369 1239 SUPERFAMILY Homeodomain-like 651 698 IPR009057 -
Dod03g1369 1239 ProSiteProfiles 'Homeobox' domain profile. 652 691 IPR001356 GO:0003677
Dod03g1369 1239 SUPERFAMILY Bet v1-like 396 604 - -
Dod03g1369 1239 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 651 1237 IPR042160 -
Dod03g1369 1239 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 651 1237 - -
Dod03g1369 1239 Pfam START domain 145 370 IPR002913 GO:0008289
Dod03g1369 1239 Pfam START domain 752 978 IPR002913 GO:0008289
Dod03g1369 1239 ProSiteProfiles START domain profile. 134 373 IPR002913 GO:0008289
Dod03g1369 1239 MobiDBLite consensus disorder prediction 1 22 - -
Dod03g1369 1239 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 14 630 IPR042160 -
Dod03g1369 1239 MobiDBLite consensus disorder prediction 61 127 - -
Dod03g1369 1239 MobiDBLite consensus disorder prediction 718 735 - -
Dod03g1369 1239 ProSiteProfiles START domain profile. 742 981 IPR002913 GO:0008289
Dod03g1369 1239 SMART START_1 143 370 IPR002913 GO:0008289
Dod03g1369 1239 SMART START_1 751 978 IPR002913 GO:0008289
Dod03g1369 1239 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 14 630 - -
Dod03g1369 1239 Gene3D - 749 952 IPR023393 -
Dod03g1369 1239 Gene3D - 142 351 IPR023393 -
Dod03g1369 1239 CDD homeodomain 20 68 IPR001356 GO:0003677
Dod03g1369 1239 Gene3D - 11 78 - -
Dod03g1369 1239 ProSiteProfiles 'Homeobox' domain profile. 12 72 IPR001356 GO:0003677
Dod03g1369 1239 SUPERFAMILY Bet v1-like 137 371 - -
Dod03g1369 1239 Gene3D - 641 688 - -
Dod03g1369 1239 Pfam Homeodomain 20 68 IPR001356 GO:0003677
Dod03g1369 1239 Pfam Homeodomain 651 685 IPR001356 GO:0003677
Dod03g1369 1239 SUPERFAMILY Homeodomain-like 14 82 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1369 Dod-Chr3 17571614 17591254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1369 651 689 Homeobox Transcription Factor Family AT4G04890 53.846 1.43e-08 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dod03g1369 START 1.9e-20 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1369 K09338 - aprc:113852280 419.468