Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1360 ATGGCATCATCCCAAGTTGAAATCGCTTCTTCTTCACCCTTCGGTTGTGTTTTGAGGGACCGTAATCACCGTGATGGATGCAGAGAAAGCAACGTTAAGGCAACACACGCGACTCTACAAAGAAATATCAAGAACTTCGTCATGGACCACCTAAACACGTGCATGTCCATGTCCCCAGATTCACCAACAAACGAGAACGAAAACCATGCTGGTCCTTGGGTCTCAAATGCTTCTTCTAAGAACAACAACAACAACAACAACAACAGCACCACCACCACCAACAACAACAACAACAATCTAGGGAACCTTCGTTTCACAAGGATCAATCGGGTCAACAACAAGGATGAATCCTCTTTGGCTTCATTGATCAGCCCGAGACACTCGCGGCTTCTCGATCGGTGGGCCGCAAGACAAGCTCGAGCGATGGTGTCAACGTTGGAGAATGAGGTTGAGTTGTTGTCTATGGATAACAGCAGCAGCAGCAGCATGCTTGAGAGAACATGTGGTTCTGCCTCTGAGGATACATCCTTGGAAATCTCCAACCTTGGTGCTTCTTCCCTTGTTCAGATATGGGAGAAGAGGCTCAACCAGAGCAATGGATCCAAACCCAACACGCCGGTGTCTAATGGGAGGGCTAGTCCCAGTTTTGCTGCAGCTACCAACAACTGCGACAATGCCCTGTCTTCTGATGCAGGGAAATCTTGCTATCTCCCTGCTGCGGCGGCGAATGAGGACTTGTCCTTGTTCGCCGATTGGGAATCGCATAGCAATCACTCCTGTTCGTCTCAAGGGCGGTGGTCCTCTTCTGAGGCTGCCGACGGCGACAGGGTCTCTGTCGCAGACATAATCAAGAGGCTGACTTCTCCAAATCCTGGTCAGAGCCCGCCGCCAATGTTTGGCGATGACAATGAGCATGAGGGGTGTACTAGCAGCATGACAAACTCTCCTTGTAGAGATTTTGCATCAGAAAATTTGGAGCAGAAGGCTTTTCCTCAGGTTACTTGCTCCCCAAGGATTCGCGGGCGGCATGCTTTCAATGATTTGCTTATGCAGTTGGAGAGGGACCGGCATGGGGAGCTCAACAACCTGGCAGAACGCAGAGCAGTTTCCAGGTTCACACAAAGAGGTCGAATTCAGTCATTGCTTCGACTGAAATTATTACAACGCGGAGTGGCTGCTAATGATAAATGCCGCCAGAAATCAACATTATCTAGAGAGAACAGACAGCCACATGAATCTGCAATCATGCAGCTAAGGGAAAGATTTAGCACAGCGGCTGAGCAGAAAACTAGAGTCCATGCAGAAGTATCTTGTCCAAGAAGTTCTCTTGCACAGATAGCGGACAACGCCATACCATGGGATAACTCTCCTGCCGCTAATCACTCCAGCAAAGACACTCACAGCCAGGCTGCTCATGAAATCGCTGATAACACCACAGGATCCATACAAATATCAATGTCTCAGACTAATGTAGATCACAATAAAGAACAAGCTCATACAAGTTCGCATGGGACATTCCAAGAAACACGAATAGAGGTTCAACATGATGACTTGCAAGAAACTGCCAACGCAACTACATCGATGACTGATTCAGACATAAATGAGGTAGCAAATAAGGCAGAGACAAGCAACCAAAACTATGCTGTGATAGAAAGCCCTTATGAAGAGACAGTAGAAGAGGAAGAGGCAAGAGACCAGCACTATGCTGAAAGCAGTTATGATGATATGTTAGAAGAGGTAGAGGCCCTGGACCAGAACTATGATGAGATTAGTTATGATTGGATCAGCGAAATTTCCCGGCCTAGGAGCTATTGGGAAGAGCGCAGGCAAGCATGGTATAGAGAGATGCTTGACACTGGTTCTCAGAATCAGGATATACGAAATCTCCTTGAAAGAAGAACAGTGTCGACTTTCCTTTCTAGTAACTTCAGGGAAACAATGGATAGATTGATGAAGTCTCATAGGGGAACACAAACACAATTAGTCAATAGTCAAGATGATGCTGAAGACAACCAAGGGTTTATAGCAATTTTACAAGAACACATGCGTTCTGCAAGTACTCGTCATGAGGATGGAAGAGATGGAGAGGACAAGGAAGAGGGTGATGAGAGGAGAAATGAGGACGAAGAAGAAGATGAAGACGAGAATCTGGAGCAGCAGGAGGAGCAGGAGCGGTATGAGGTTAGTGACTCTTTTCATCAACCCTCATCACCAAGTCCTTCGAGATCATGGAGTTACAGAGACAATGAAGCAGGGGATGATTTTGATAGAATTGTATCTACAACATCCTCACAACCTTCTCAGTCTCAATCTTTTAGTCCGAATGACAGGCCATACACTTCATCCACCAATCACAATTCAATTGAAATGGAACTCATCTACGATTTGAGAGGACAAATGGAGCAACTTTATCATGAGATGTCTGAGCTAAGGAAATCAATAAAGAGCTGTGTGGATATGCAGATGCAATTACAGCAATCCATGAATCAAGAGTTTCACACAGTTAAAACAGAAGAAAAGAAGTCGCATAACCAGGCACCTAAGAAAGGCAACTGCTGCATTTGCTATGATACGAAAGTTGACTCACTTTTATACAGGTGTGGGCACATGTGTGCGTGTCTCAAGTGTGCGAATGAGCTGCAATGGAACGGTGGAAAATGCCCGATTTGTCGAGCTAAAATAGTGGATGTTGTTCGAGTATATGTTGATACTTAG 2715 0.4586 MASSQVEIASSSPFGCVLRDRNHRDGCRESNVKATHATLQRNIKNFVMDHLNTCMSMSPDSPTNENENHAGPWVSNASSKNNNNNNNNSTTTTNNNNNNLGNLRFTRINRVNNKDESSLASLISPRHSRLLDRWAARQARAMVSTLENEVELLSMDNSSSSSMLERTCGSASEDTSLEISNLGASSLVQIWEKRLNQSNGSKPNTPVSNGRASPSFAAATNNCDNALSSDAGKSCYLPAAAANEDLSLFADWESHSNHSCSSQGRWSSSEAADGDRVSVADIIKRLTSPNPGQSPPPMFGDDNEHEGCTSSMTNSPCRDFASENLEQKAFPQVTCSPRIRGRHAFNDLLMQLERDRHGELNNLAERRAVSRFTQRGRIQSLLRLKLLQRGVAANDKCRQKSTLSRENRQPHESAIMQLRERFSTAAEQKTRVHAEVSCPRSSLAQIADNAIPWDNSPAANHSSKDTHSQAAHEIADNTTGSIQISMSQTNVDHNKEQAHTSSHGTFQETRIEVQHDDLQETANATTSMTDSDINEVANKAETSNQNYAVIESPYEETVEEEEARDQHYAESSYDDMLEEVEALDQNYDEISYDWISEISRPRSYWEERRQAWYREMLDTGSQNQDIRNLLERRTVSTFLSSNFRETMDRLMKSHRGTQTQLVNSQDDAEDNQGFIAILQEHMRSASTRHEDGRDGEDKEEGDERRNEDEEEDEDENLEQQEEQERYEVSDSFHQPSSPSPSRSWSYRDNEAGDDFDRIVSTTSSQPSQSQSFSPNDRPYTSSTNHNSIEMELIYDLRGQMEQLYHEMSELRKSIKSCVDMQMQLQQSMNQEFHTVKTEEKKSHNQAPKKGNCCICYDTKVDSLLYRCGHMCACLKCANELQWNGGKCPICRAKIVDVVRVYVDT* 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1360 904 Pfam Zinc finger, C3HC4 type (RING finger) 849 896 - -
Dod03g1360 904 MobiDBLite consensus disorder prediction 756 784 - -
Dod03g1360 904 SUPERFAMILY RING/U-box 832 896 - -
Dod03g1360 904 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 834 903 IPR013083 -
Dod03g1360 904 MobiDBLite consensus disorder prediction 286 314 - -
Dod03g1360 904 ProSiteProfiles Zinc finger RING-type profile. 852 891 IPR001841 -
Dod03g1360 904 MobiDBLite consensus disorder prediction 57 102 - -
Dod03g1360 904 PANTHER BNAC05G24000D PROTEIN 1 903 - -
Dod03g1360 904 PANTHER BNAC05G24000D PROTEIN 1 903 - -
Dod03g1360 904 MobiDBLite consensus disorder prediction 683 700 - -
Dod03g1360 904 Coils Coil 703 723 - -
Dod03g1360 904 CDD mRING-HC-C3HC5_NEU1 851 891 - -
Dod03g1360 904 Coils Coil 136 156 - -
Dod03g1360 904 MobiDBLite consensus disorder prediction 683 784 - -
Dod03g1360 904 MobiDBLite consensus disorder prediction 701 721 - -
Dod03g1360 904 MobiDBLite consensus disorder prediction 730 746 - -
Dod03g1360 904 MobiDBLite consensus disorder prediction 452 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1360 Dod-Chr3 17358053 17362878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1360 852 900 C3H Transcription Factor Family AT3G06140 38.776 3.69e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1360 - - gmx:100796627 904.434