Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1348 ATGTTTAGTCAGAGCATGGATTCTTCAAGGGATGCTGGTGGTGTTGTTGCAGGGATAATTCCCATGCGCTTTGTGTGGCCATATGGTGGAAGGAGTGTGTTTCTCAGTGGTTCTTTCACAAGGTCTGAGCTTGTACCAATGTCGCCAGTGGAAGGTTGCCCAACTGTATTTCAAGTTGTTTATAGCTTGTCCCCCGGTTACCATCAGTACAAGTTTTTTGTTGATGGAGAATGGCGGCATGATGAGCATCAACCTCATGTTCCTGGAGAATACGGGATGGTCAACACTGTCTTCTTGGCTACTGATCCTAACTACGTACCCGATATACCACCAGATGTCACTTCTGGAAATAACATGGATGTGGATAATGAGGCTTTTCGCCGTGGGCAGGTCCGGTTGACAGATGGTACATCAAGTGAGGTGCTCCCAAGAATATCAGATGCTGATGTACAGATCTCCCGTCAGCGTATTTCTGCATTTCTATCAATGCACACCGGATATGAACTACTTCCTGAGTCAGGCAAGGTTGTTGCCTTGGATGTTGATCTGCCAGTGAAGCAGGCATTTCATATACTTCATGAGCAGGGAACTTACATGGCTCCTCTTTGGGACTTCAGCAAGGGACAATTTGTTGGTGTTCTTAGTGCTTTGGATTTTATTTTAATTTTGAGAGAGCTGGGAAACCATGGGTCCACTTTGACAGAAGAGGAGCTTGAAACACATACCATATTGGCTTGGAAAGAAGGAAAGTCATATCTAAATAGACAGAGCAATGGACATGGAGCTGCTTTTTCGAGACATTTTATCCGTGCAGGGCCATATGATAATCTGAAAGATATTGCCTCGAAGATCTTACAAAAGGAGGTCTCAACAGTTCCTATCATCCATTCATCTTCTGAAGATGGTTCAAACCCCCAGTTACTGCATCTTGCTTCACTTTCAGGAATACTTAAATGCATTTGCCGGTATTTTAGGAATTGTTCTAGTTCATTGCCTATACTGCAACTTCCAATATGTGCAATACCTGTGGGCACGTGGGTTCCTAAAATTGGGGAATCAGATAGGCGGCCTCTAGCATTGTTGAGACCAAGCGCTTCTCTTGCTTCAGCCCTAAATTTATTAGTTCAAGCCCAAGTAAGTTCAGTACCAATAGTTGATGACAATGATTCATTACTGGATATATATTGTCGGAGTGATATAACAGCTTTGGCCAAGGACAGAGCATATACACATATCAATCTTGACGAAATGACTGTTCATCAGGCTTTGCAGCTGGGCCAAGACGCATATAGTACCTTAGAGCTTAGAAGTCAAAGATGTCAGATGTGTTTGCGATCTGATTCTCTGCATAAAGTGATGGAACGTTTGGCAAATCCAGGTGTCAGGCGGCTTGTCATTGTAGAAGCTGGCAGCAAGCGTGTCGAAGGCATTGTTTCATTGAGTGACGTATTCAAGTTCTTCCTTGGTTAA 1470 0.4367 MFSQSMDSSRDAGGVVAGIIPMRFVWPYGGRSVFLSGSFTRSELVPMSPVEGCPTVFQVVYSLSPGYHQYKFFVDGEWRHDEHQPHVPGEYGMVNTVFLATDPNYVPDIPPDVTSGNNMDVDNEAFRRGQVRLTDGTSSEVLPRISDADVQISRQRISAFLSMHTGYELLPESGKVVALDVDLPVKQAFHILHEQGTYMAPLWDFSKGQFVGVLSALDFILILRELGNHGSTLTEEELETHTILAWKEGKSYLNRQSNGHGAAFSRHFIRAGPYDNLKDIASKILQKEVSTVPIIHSSSEDGSNPQLLHLASLSGILKCICRYFRNCSSSLPILQLPICAIPVGTWVPKIGESDRRPLALLRPSASLASALNLLVQAQVSSVPIVDDNDSLLDIYCRSDITALAKDRAYTHINLDEMTVHQALQLGQDAYSTLELRSQRCQMCLRSDSLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDVFKFFLG* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1348 489 SUPERFAMILY E set domains 19 100 IPR014756 -
Dod03g1348 489 Pfam Glycogen recognition site of AMP-activated protein kinase 20 99 IPR032640 -
Dod03g1348 489 CDD E_set_AMPKbeta_like_N 21 98 - -
Dod03g1348 489 Gene3D - 337 489 IPR046342 -
Dod03g1348 489 Gene3D - 146 329 IPR046342 -
Dod03g1348 489 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 12 489 - -
Dod03g1348 489 SUPERFAMILY CBS-domain pair 156 326 IPR046342 -
Dod03g1348 489 SUPERFAMILY CBS-domain pair 355 488 IPR046342 -
Dod03g1348 489 SMART cbs_1 439 488 IPR000644 -
Dod03g1348 489 SMART cbs_1 175 224 IPR000644 -
Dod03g1348 489 SMART cbs_1 357 405 IPR000644 -
Dod03g1348 489 Pfam CBS domain 442 488 IPR000644 -
Dod03g1348 489 Pfam CBS domain 355 401 IPR000644 -
Dod03g1348 489 ProSiteProfiles CBS domain profile. 354 410 IPR000644 -
Dod03g1348 489 ProSiteProfiles CBS domain profile. 169 231 IPR000644 -
Dod03g1348 489 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 12 489 - -
Dod03g1348 489 Gene3D Immunoglobulins 20 106 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1348 Dod-Chr3 17182036 17192314 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1348 - - gmx:100781819 844.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2715 05 53289036 53295726 Dod03g1348 03 17182036 17192314 PCT