Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1344 ATGGTTGATAACGTTGGTGGCAGTTCCTCTAACGACAATGGCGGCATCAAGGAACAAGACCGGTTGCTTCCAATAGCCAATGTTGGTCGCATAATGAAGCAGATTCTGCCTCAGAATGCAAAAATCTCGAAGGAAGCCAAGGAAACAACGCAGGAGTGTGTGTCTGAGTTCATAAGTTTTGTGACCAGTGAGGCCTCAGAGAAGTGCAGGAAGGAGAGGAGGAAGACTGTGAATGGAGATGACATATGCTGGGCACTTGCAGCACTTGGTTTTGATGACTATGCAGAGACAATGAGAAGGTACTTGCATAGATATAGAGAGCTAGAGGTAGATAAGGCTAATAACCAAGAGAGGGGAAATAGCCCTGAAGAGAAGGATGAACTATATAAATTGCCAACTAAAGGTCTTTGCATGCTTAATTTGGTTGATCTACTGAATTTGAGAAATATTGATACACAAAGCTTGGCAATTGTTTCTTCAATCTCTATCCAAACGGAATAA 501 0.4251 MVDNVGGSSSNDNGGIKEQDRLLPIANVGRIMKQILPQNAKISKEAKETTQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALAALGFDDYAETMRRYLHRYRELEVDKANNQERGNSPEEKDELYKLPTKGLCMLNLVDLLNLRNIDTQSLAIVSSISIQTE* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1344 166 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 125 - -
Dod03g1344 166 SUPERFAMILY Histone-fold 19 121 IPR009072 GO:0046982
Dod03g1344 166 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 22 86 IPR003958 -
Dod03g1344 166 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Dod03g1344 166 PRINTS CCAAT-binding transcription factor subunit A signature 50 68 - -
Dod03g1344 166 PRINTS CCAAT-binding transcription factor subunit A signature 69 87 - -
Dod03g1344 166 ProSitePatterns NF-YB/HAP3 subunit signature. 53 69 IPR003956 GO:0005634|GO:0006355|GO:0043565
Dod03g1344 166 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 125 IPR027113 GO:0001228|GO:0006355|GO:0016602
Dod03g1344 166 Gene3D Histone, subunit A 10 134 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1344 Dod-Chr3 17100068 17100805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1344 16 126 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.973 1.10e-58 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Dod03g1344 CBFD_NFYB_HMF 2.5e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1344 K08065 - gmx:100794513 220.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1344 03 17100068 17100805 Dod03g1344 03 17100068 17100805 ECH
Dod05g2709 05 53225372 53225812 Dod03g1344 03 17100068 17100805 PCT