Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1331 ATGCAGAACGAGGAGGGACAGAGCACCGAGCTCTACATTCCTAGGAAGTGCTCCGCAACCAACAGATTGATAACTGCAAAGGACCATGCCTCCGTTCAGATCAACATCGGTCATTTGGATGAGAACGGTGTCTACAATGGCCAATTCTCCACCTTCGCCCTCTGTGGCTTCATTCGCGCACAGGGTGATGCTGACAGTGCATTAGATCGCTTGTGGCAGAAGAAGAAAGTTGAAGTTAAGCAACAATAG 249 0.494 MQNEEGQSTELYIPRKCSATNRLITAKDHASVQINIGHLDENGVYNGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVKQQ* 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1331 82 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
Dod03g1331 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 82 - -
Dod03g1331 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Dod03g1331 82 PIRSF RPS21e 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Dod03g1331 82 Pfam Ribosomal protein S21e 1 77 IPR001931 GO:0003735|GO:0005840|GO:0006412
Dod03g1331 82 Gene3D - 1 81 IPR038579 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1331 Dod-Chr3 16927477 16929317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1331 1 81 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 86.420 3.07e-52 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1331 K02971 - gmx:100817753 164.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2689 05 53038680 53040219 Dod03g1331 03 16927477 16929317 PCT