Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1304 ATGCCAGAAAACAACAAAATGGAACCCACTCACAGACGCACCAAGAACAACAGCAGCAACAACCACAACCACCCTCATTCATTCCCAGTCGCCACGGGCAACGCCGCCGCAGCAAGGGGATACAACCTGAGCGGCAGGATCATGCTCACCGCCGTCATCCTCTTATTCTTCCTCGTCCTCCTAATGCTCTCCCTCCACCTCTACGCCCGCTGGTACCTCACCCGCGCCCGCCGCCGCCACATCATCCGCCGCAACCTCCGCCGGCGCCGCACCAACATCGTCTTCTACCTCCCCGACTCCCCCACCACCGCCGGCGCCCTCCCCCGAGGCCTCGACGCCGCCCTCATCGCCTCCCTCCCCGTCTTCACCTACGACCCCAATACCCGCCCGGAAAACGCGCAAGATTGCGCTGTCTGCCTCTCGGAGTTCGAAGAGGGGGAGTCGGGTCGGGTCCTGCCCAAGTGCAAACACGCGTTCCACGCCGACTGCATCGACATGTGGTTCCACTCTCACGCCACGTGTCCACTCTGCCGTGCGCCCGTTGAGCCCCAGCTGCCCGAGTCGGAATCCCGATCCGAGGTTGTTATAACCGTTTCTGAGCCGGATACTGGTTCGAGCTCCGGTTCGGGAGTGTACCGGGCCGGGAACGAGATGAGGAAGCCGTTTAACGTGACGGTTGAGGTTCCGGCGAGGGGCGACGAGGGTTTTCGCCGCGACGATTCGGGTCGCGACTCGCCGTCGTCGTTCCGGTCTCCGGTGAGTCGGATGCTGTCGTTCAAGAGGATGCTCAGCAAGGGAACGGAAGGGGAGCGTGTCTCCGTCGTCGGGTGGCGGCGGTGGTGTTGGTTGCAGCTCGTCGGCCGAGCTGAGCGACGCGGAGCGAGGTGA 888 0.6374 MPENNKMEPTHRRTKNNSSNNHNHPHSFPVATGNAAAARGYNLSGRIMLTAVILLFFLVLLMLSLHLYARWYLTRARRRHIIRRNLRRRRTNIVFYLPDSPTTAGALPRGLDAALIASLPVFTYDPNTRPENAQDCAVCLSEFEEGESGRVLPKCKHAFHADCIDMWFHSHATCPLCRAPVEPQLPESESRSEVVITVSEPDTGSSSGSGVYRAGNEMRKPFNVTVEVPARGDEGFRRDDSGRDSPSSFRSPVSRMLSFKRMLSKGTEGERVSVVGWRRWCWLQLVGRAERRGAR* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1304 295 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Dod03g1304 295 SUPERFAMILY RING/U-box 116 185 - -
Dod03g1304 295 CDD RING-H2_EL5_like 135 178 - -
Dod03g1304 295 MobiDBLite consensus disorder prediction 1 31 - -
Dod03g1304 295 MobiDBLite consensus disorder prediction 1 15 - -
Dod03g1304 295 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 36 203 - -
Dod03g1304 295 MobiDBLite consensus disorder prediction 230 251 - -
Dod03g1304 295 PANTHER RING-H2 FINGER PROTEIN ATL64 36 203 - -
Dod03g1304 295 Pfam Ring finger domain 135 178 IPR001841 -
Dod03g1304 295 SMART ring_2 136 177 IPR001841 -
Dod03g1304 295 MobiDBLite consensus disorder prediction 231 245 - -
Dod03g1304 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 185 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1304 Dod-Chr3 16619979 16621467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1304 20 265 Rapid Response to Elicitors AT3G16720 49.442 7.38e-64 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1304 - - lja:Lj6g3v1468220.1 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1304 03 16619979 16621467 Dod03g1304 03 16619979 16621467 ECH
Dod05g2663 05 52805476 52807254 Dod03g1304 03 16619979 16621467 PCT