Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1302 ATGGCTGAAAGGAACAATGCTGCTAACAATGAACAGAAGAGGAGATTTGCCATTGTTGGTGTTTCCTCAATCCTTCTTGTGGCCATGGTAGCTGCAGTGGCTGTTGGTATAACAAGAGGAAGAGGAAGCCAAGGAGGGCATGAAGGTGGTGATGGCCAACTCTCAAGCCATCAAAAGAATGTACAGATTCTTTGCCAACCAACAGAATACAAAGAAACATGTGAGCAAAGCCTCTCAAAGACATCAAATGAGACAACAGACATGAAAGAGCTAATCAAAGCAGCATTCAATGAAACATCAGGTGAGTTATTGAAGCAAATACACAACTCCACACTCTACCATGAGTTGGCCAAGGACAACATGACAAGGCAGGCCATGGACATATGCAATGAAGTGTTGGGCTATGCTGTTGATGACATACAGAAATCTGTTAACACATTGGACAAGTTTGATCTAAGCAAGTTGGGTGAATATGCATATGACCTCAAGGTGTGGATTGCAGGAACCATGTCACACCAACAAACATGCTTGGATGGCTTTGAGAACACAACAACAAAAGCTGGTGAAACAATGGCCAAGGCGCTTAACACGTCCTTGGAGCTAAGTAGCAATGCCTTGGACATGATCAATGGTGTTTCTAGTTTCCTCAACAACCTTGACCTTAACTCGATCGCCAGCAGAAGGCTTCTCTCTGATGAGGAAGAAGAATCATCATCAGTTGAGGATGGTGGTATTCCTTCTTGGGTGAATGAAGGGCAGAGAAGACTTCTTCAGGCGGCGGCTGCAGGAGGAGGGCCTGGAAACGTTGCGCCTAATGCAGTTGTGGCTCAAGATGGGAGTGGACAGTTCAAAACACTCACTGATGCACTTAAGACCGTTCCAAAGCAGAACACTAGGCCCTTTGTGATTTATGTTAAGGCAGGTGTGTACAAAGAGATTGTGAATCTGAACAAGTACATGACTTATGTCACAATCATTGGAGATGGACCCACCAATACCATATTCACCGGCAGCCAAAATTACGTCGATGGTGTCCAAACTTACAACACCGCAACCTTTGGTGTCAATGCTGCTAACTTCATGGCCAAGGGTAGCTGCTACTTCACTGGGGAGCCACAAGTTGCTACCTTGAACCCCAAGATAGCATACTTGGGTAGGCCTTGGAGAGCCTACGCTAAGGTGGTCATCATGGACTCTCAGATTGATGACATATTTGTACCACAAGGGTACATGCCATGGATGGGAAGTGCATTCGAGGCCACATGTACCTATTATGAGTACAACAACAAGGGTCCTGGCGCTAACACCAGTTTAAGGGTCAAGTGGCCTGGTTTTAAGGTCATAACCCCTGTGGAAGCTGCTAACTACTATCCAGGCAAGTTCTTTGAACTTGCTAATTCAACTGACCGTGATTCCTGGATCCTTAACTCTGGGGTACCCTACGCACTTGGCCCTACTCCAACCACTGCCACAGCTACATCAGTCTAG 1488 0.461 MAERNNAANNEQKRRFAIVGVSSILLVAMVAAVAVGITRGRGSQGGHEGGDGQLSSHQKNVQILCQPTEYKETCEQSLSKTSNETTDMKELIKAAFNETSGELLKQIHNSTLYHELAKDNMTRQAMDICNEVLGYAVDDIQKSVNTLDKFDLSKLGEYAYDLKVWIAGTMSHQQTCLDGFENTTTKAGETMAKALNTSLELSSNALDMINGVSSFLNNLDLNSIASRRLLSDEEEESSSVEDGGIPSWVNEGQRRLLQAAAAGGGPGNVAPNAVVAQDGSGQFKTLTDALKTVPKQNTRPFVIYVKAGVYKEIVNLNKYMTYVTIIGDGPTNTIFTGSQNYVDGVQTYNTATFGVNAANFMAKGSCYFTGEPQVATLNPKIAYLGRPWRAYAKVVIMDSQIDDIFVPQGYMPWMGSAFEATCTYYEYNNKGPGANTSLRVKWPGFKVITPVEAANYYPGKFFELANSTDRDSWILNSGVPYALGPTPTTATATSV* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1302 495 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 212 IPR035513 -
Dod03g1302 495 ProSitePatterns Pectinesterase signature 1. 297 316 IPR018040 -
Dod03g1302 495 TIGRFAM PME_inhib: pectinesterase inhibitor domain 56 211 IPR006501 GO:0004857
Dod03g1302 495 SMART PMEI_2 56 208 IPR006501 GO:0004857
Dod03g1302 495 Pfam Pectinesterase 272 364 IPR000070 GO:0030599|GO:0042545
Dod03g1302 495 Pfam Pectinesterase 366 461 IPR000070 GO:0030599|GO:0042545
Dod03g1302 495 Gene3D - 266 364 IPR012334 -
Dod03g1302 495 CDD PMEI-like_3 64 214 - -
Dod03g1302 495 Gene3D - 365 485 IPR012334 -
Dod03g1302 495 Pfam Plant invertase/pectin methylesterase inhibitor 61 208 IPR006501 GO:0004857
Dod03g1302 495 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 211 IPR035513 -
Dod03g1302 495 PANTHER PECTINESTERASE 365 489 - -
Dod03g1302 495 PANTHER PECTINESTERASE 8 363 - -
Dod03g1302 495 SUPERFAMILY Pectin lyase-like 269 481 IPR011050 -
Dod03g1302 495 PANTHER PECTINESTERASE 365 489 - -
Dod03g1302 495 PANTHER PECTINESTERASE 8 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1302 Dod-Chr3 16608301 16610863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1302 360 493 Carbohydrate Esterase AT3G05610 36.232 1.30e-20 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1302 K01051 - gmx:100820068 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1302 03 16608301 16610863 Dod03g1302 03 16608301 16610863 ECH
Dod05g2661 05 52793967 52796247 Dod03g1302 03 16608301 16610863 PCT