Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1286 ATGTGTGGAGGTGCTATAATCTCAGACTTCACTGGCGTGAAGCGTGGCCGGAAGTTGGCTCCTCGGGACATATGGGCAGAGATTGACCCTTTTTCTGACCTCCTTGGCTTTGACAACACCAACACTCCCAAGGACCAACCACCACTACCCCACTTTGATCAAAAGCTGCCTCAAATCCCAAATAACAAAGTGGCAGCACGTGACAAGAAGGTAGAGGAGAAAAACGAGGCGGTGGTCGGTGCAGGAAAGAAGGATCCTCATGCAAGAGCAGGGAATAAGAACACCAAGGGTCATCAAAATCAGAGAGCACGTAAGAACGTGTACAGAGGAATCAGGCAAAGGCCATGGGGCAAGTGGGCCGCCGAGATAAGGGACCCACACAAAGGAGTCCGCGTTTGGCTCGGCACCTTCAACACCGCCGAGGAAGCTGCCAGGGCCTATGATGACGCCGCCAGACGCATCCGCGGCGATAAGGCCAAGCTTAATTTCCCGGCCCCCGCACGCGGAGGATCTGGCAGCGCCGTTGCATCCCCACCGCCAGCCAAGAAGCTGTGCCTCAATGACACTGAGCTGGCCGGACTGTCTCCGGCTAGCTCTGAAGTCACCTCACTGTCGCCTGTCTCTGCCATCAACAATGGCGGAGACGGCGGGGTCGAGGGGATGGACCTCAAGCAGCAGATCTCTGACCTTGAATGGTTCCTTGGGTTGGAGCATGAGCAACCATCGCTAATGAACTTTGCTGATTGGATTAACAACAATAATAACAACATGGACCTGTGGATGCTGGACGACGTCGGTATGCCCAACCGTAACATGGTGTACTAG 825 0.5479 MCGGAIISDFTGVKRGRKLAPRDIWAEIDPFSDLLGFDNTNTPKDQPPLPHFDQKLPQIPNNKVAARDKKVEEKNEAVVGAGKKDPHARAGNKNTKGHQNQRARKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFNTAEEAARAYDDAARRIRGDKAKLNFPAPARGGSGSAVASPPPAKKLCLNDTELAGLSPASSEVTSLSPVSAINNGGDGGVEGMDLKQQISDLEWFLGLEHEQPSLMNFADWINNNNNNMDLWMLDDVGMPNRNMVY* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1286 274 Gene3D AP2/ERF domain 107 165 IPR036955 GO:0003700|GO:0006355
Dod03g1286 274 PANTHER DNA-BINDING DOMAIN 1 178 IPR044808 GO:0003700|GO:0009873
Dod03g1286 274 SMART rav1_2 107 170 IPR001471 GO:0003700|GO:0006355
Dod03g1286 274 MobiDBLite consensus disorder prediction 66 92 - -
Dod03g1286 274 CDD AP2 108 165 IPR001471 GO:0003700|GO:0006355
Dod03g1286 274 Pfam AP2 domain 107 156 IPR001471 GO:0003700|GO:0006355
Dod03g1286 274 PANTHER EREBP TRANSCRIPTION FACTOR 1 178 - -
Dod03g1286 274 SUPERFAMILY DNA-binding domain 107 165 IPR016177 GO:0003677
Dod03g1286 274 MobiDBLite consensus disorder prediction 66 104 - -
Dod03g1286 274 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
Dod03g1286 274 PRINTS Ethylene responsive element binding protein signature 108 119 IPR001471 GO:0003700|GO:0006355
Dod03g1286 274 ProSiteProfiles AP2/ERF domain profile. 107 164 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1286 Dod-Chr3 16374308 16376974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1286 1 265 AP2-EREBP Transcription Factor Family AT3G16770 43.793 1.04e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Dod03g1286 AP2 5.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1286 K09286 - gmx:100817253 253.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1286 03 16374308 16376974 Dod03g1286 03 16374308 16376974 ECH
Dod05g2652 05 52739402 52740956 Dod03g1286 03 16374308 16376974 PCT