Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1269 ATGAATCTGAGCAACGGCAAGGTATCCATGTCAACGCCTAGTTCAAGCTCCACGCTGAAGTCCACCGGAGACGGCGTCTCCGACCAGTTTCCGGCGGGTCTAAGGGTGCTGGTTGTGGATGATGATCCTACGTGCCTTATGATCCTTGAGAGGATGCTAAAGGCTTGCCTCTATGAGGTTACCAAATGCAAGCGAGCTGAGGTTGCATTGTCGCTTCTGAGAGAGAACAAGAATGGATTTGACATTGTTATCAGTGATGTGCATATGCCTGATATGGATGGATTTAAGCTTTTGGAGCATATTGGGTTGGAGATGGACCTACCAGTTATTATGATGTCAGCAGATGATGGAAAACAAGTTGTTATGAAAGGTGTGACACATGGTGCTTGTGATTACCTAATTAAACCCGTGCGCATCGAGGCTCTGAAGACGATATGGCAACATGTGGTTCGGAAGAGAAAGAATGGGTGGAAAGATTCGGAGCAATCGGGTAGTGTGGATGAAGGAGATCAGCTGCAGAAGGCATCTGATGATGCAGATTACTCATCCTCGGCAAATGAAGGGAAGAACTCCAAGAAGAAGAGGGAAGGCGAAGAAGAAGCAGATGAGAGGGATGATAGTTCCACGTTAAAGAAGCCACGGGTTGTTTGGTCTGTTGAGCTCCATCAACAGTTTATGGCTGCCGTGAATCAACTGGGAATCGACAAGGCTGTTCCTAAAAAGATTCTGGAATTGATGAATGTTCCTGGACTTACCAGAGAAAACGTTGCCAGCCACCTTCAGAAATACCGTTTATATCTTCGAAGGTTGAGTGGAGTTTCCCAGCAGCAGAATAACTCCTTCATGAGCTCACAAGAAGCAACGTTCGGGCCAACTTCAATCAATGGAATTGATCTTCAAGCTCTTTCAGTTGCAGGCCAACTCCCAGCACAAAGCCTAGCCAAGCTTCAAGCAGCAGGACTTGGCAGGCCAACTGCAAAACCGGGTGTGCAGATGCCTCTAGTTGAGCAAAGGAACCTTTTCAGTTTTGAAAGCCCAAGATTACGATTTGGGGAAGGGCAAATGCAACATATGAGCACCAGTAGATCAGTGAACTTGCTTCATGGAATCCCTACCAACATGGAGCCAAAGCAGCTTGCCAATCTGCACCAATCTACCCAATCCATTGCCAACTTGAATATGCGAATCAATGCCTCTGCTGCACAGAGAAACCCCTTGTTGATGCAGATGGGTCAATCCCAACCAAGAGGACAGATGCTAAGTGAAAACACTGGTTCTCATGTTAACAGGCTTCCATCATCATTGTTGCAGCCTGCATTACCAAATGGAATTTCTAACGGTGTTCTGGGAAATGGTATTGCTAGTTCCAGCAACGTAAATCCTGGTTATAATCAAGTTCCACAAAGGTCTTCATTGATGAGTTTTCCCATGAATCAAACCAGTGATATGTCAGTGAGTAGTTATACTCTTGGAAGCAGTCCAGGTATATCCAGTATCACATCAAAAGGCTTGTTACAAGAGGAAGTTACTTCAGGAATTAAAGGATCCAGCGGATTTGTTCCAGGTTATGACATTTTTAATGAACTCCACCATCAGACGTCCCATGATTGGGACTTAACAAACACTGGCCTGGCATATGACGCTACTCAGCATGCGAATCCTTTACAAGGTAATGTCGATGTCTCAGTCTCACCATCAGTTTTAGTCAATCAGGGTTTTTCTTCTATTCAACAGACTGGACAAAATAGAGATGCTACTCCAATTGGAAAAGCTATGTTCTCCATAGGTGAAGGCATGGATCAAGGTAATCTCCAAAGTGTTAGTCAACCCTTAAATCCACTTCTTGTTGACAATTCATTAAGAGTTAAAGCCGAAAGAGTTAATGATGCAAGCTCCCATACTAACCTCTTCCCCGAGCAATATGGGCAGGAGGATCTTATGAGTGCACTACTGAAACAGGAAGGCATTGGGCCAGCTGAGAATGAGTTTGAGTTTGATGGATATTCCTTAGACAACATTCCAGTTTAG 2028 0.4477 MNLSNGKVSMSTPSSSSTLKSTGDGVSDQFPAGLRVLVVDDDPTCLMILERMLKACLYEVTKCKRAEVALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKQVVMKGVTHGACDYLIKPVRIEALKTIWQHVVRKRKNGWKDSEQSGSVDEGDQLQKASDDADYSSSANEGKNSKKKREGEEEADERDDSSTLKKPRVVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQNNSFMSSQEATFGPTSINGIDLQALSVAGQLPAQSLAKLQAAGLGRPTAKPGVQMPLVEQRNLFSFESPRLRFGEGQMQHMSTSRSVNLLHGIPTNMEPKQLANLHQSTQSIANLNMRINASAAQRNPLLMQMGQSQPRGQMLSENTGSHVNRLPSSLLQPALPNGISNGVLGNGIASSSNVNPGYNQVPQRSSLMSFPMNQTSDMSVSSYTLGSSPGISSITSKGLLQEEVTSGIKGSSGFVPGYDIFNELHHQTSHDWDLTNTGLAYDATQHANPLQGNVDVSVSPSVLVNQGFSSIQQTGQNRDATPIGKAMFSIGEGMDQGNLQSVSQPLNPLLVDNSLRVKAERVNDASSHTNLFPEQYGQEDLMSALLKQEGIGPAENEFEFDGYSLDNIPV* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1269 675 SMART REC_2 34 146 IPR001789 GO:0000160
Dod03g1269 675 MobiDBLite consensus disorder prediction 187 209 - -
Dod03g1269 675 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 646 - -
Dod03g1269 675 CDD REC_typeB_ARR-like 36 150 - -
Dod03g1269 675 ProSiteProfiles Response regulatory domain profile. 35 150 IPR001789 GO:0000160
Dod03g1269 675 Pfam Myb-like DNA-binding domain 214 264 IPR001005 -
Dod03g1269 675 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 212 265 IPR006447 GO:0003677
Dod03g1269 675 MobiDBLite consensus disorder prediction 1 24 - -
Dod03g1269 675 MobiDBLite consensus disorder prediction 157 209 - -
Dod03g1269 675 SUPERFAMILY CheY-like 33 153 IPR011006 -
Dod03g1269 675 Pfam Response regulator receiver domain 36 144 IPR001789 GO:0000160
Dod03g1269 675 SUPERFAMILY Homeodomain-like 209 269 IPR009057 -
Dod03g1269 675 MobiDBLite consensus disorder prediction 157 175 - -
Dod03g1269 675 Gene3D - 209 271 - -
Dod03g1269 675 Gene3D - 34 166 - -
Dod03g1269 675 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 646 IPR045279 GO:0009736
Dod03g1269 675 PIRSF RR_ARR_type-B 14 667 IPR017053 GO:0003677|GO:0003700|GO:0009736
Dod03g1269 675 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 211 268 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1269 Dod-Chr3 16040855 16045176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1269 68 675 Response Regulator Gene Family AT3G16857 50.076 3.59e-180 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Dod03g1269 Response_reg 5.4e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1269 - K14491 gmx:100814930 1032.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1269 03 16040855 16045176 Dod03g1269 03 16040855 16045176 ECH
Dod05g2633 05 52552709 52556129 Dod03g1269 03 16040855 16045176 PCT