Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1266 ATGTCGTTGAGGCCAAATGAGAGGACGGAGGTTCGCCGGAACAGGTACAAGGTGGCGGTGGACGCCGACGAGGGACGGCGGAGGAGGGAGGACAACATGGTGGAGATCCGGAAGAGCAAGCGCGAGGAGAGCCTCCAGAAGAAGCGCCGCGAGGGCCTCCAGGCCCAGCAGCTGCAGCAGCAGCAGTTCCCATCAGCTCTTCAAGCTTCATCCATTCTCGAGAAGAAGTTAGAGAGTCTTCCTGCTATGGTAGCTGGGGTGTGGTCCGATGATAACAACCAGCAGCTGGAAGCAACCACGCAGTTTCGGAAGCTGCTTTCGATCGAGCGCAGCCCTCCCATTGAGGAAGTTATTCAATCTGGTGTTGTCCCACGGTTCGTTCAGTTTCTAGTTAGGGAGGATTTTCCTCAACTTCAGTTTGAAGCTGCATGGGCTCTCACAAACATAGCATCTGGAACTTCTGAGAATACTAAGGTGGTAATTGATCATGGGGCGGTCCCAATTTTTGTCAAGCTACTTAGCTCTCCTAGTGATGATGTTCGGGAGCAGGCGGTGTGGGCATTGGGAAATGTTGCTGGTGACTCCCCTAGGTGCCGTGATCTTGTTCTCAGCCACGGTGCCCTGATCCCACTGGGCAAGCCACAGCCTCCATTTGAACAGGTGAGGCCAGCGCTTCCAGCTCTTGAGCGTTTGGTTTTTTCCAATGATGAAGAGGTCCTGACAGATGCATGCTGGGCACTTTCATATCTTTCTGATGGAACAAATGACAAAATCCAAGCAGTTATTGAGGCTGGTGTATGTGGTAGGCTGGTGGAGCTTCTTCTGCACCCTTCTCCTTCGGTGTTGATTCCTGCTCTTCGTACAGTGGGGAATATTGTGACTGGAGATGATATTCAAACCCAGTCTATTATCAACCACGGAGCACTCCCATGCCTTTTGAGCCTGTTGACGCATAATCACAAAAAAAGTATCAAGAAAGAAGCTTGCTGGACTATATCAAACATTACAGCTGGAAACAGAGAACAAATACAGGCTGTTATTGAAGCTGGTCTGATTGCTCCCCTTGTCAATCTTCTTCAAAATGCTGAGTTTGACATAAAAAAAGAAGCTGCATGGGCAATCTCAAATGCTACATCTGGTGGTACTCATGAGCAGATCAAGTTTTTGGTTAGCCAAGGTTGCATTAAACCTCTTTGTGATCTGCTTGTCTGCCCTGACCCAAGAATTGTCACTGTCTGCTTAGAAGGCCTAGAGAATATTCTCAAGGTGGGGGAGGCTGAGAAGAGCTTGGGTAACACTGGAGATGTGAACTTGTACGCTCAGATGATAGATGATGCTGAGGGATTGGAGAAAATTGAAAACTTGCAGAGTCACGACAACAATGAAATATATGAGAAGGCTGTCAAAATTCTTGAAACATACTGGTTGGAAGATGAAGATGAGGCACTTCCTCCAGGCGATGGTGCTCAGCCTGGTTTCAATTTTGGAGGCAATGAGCTTCCGGTTCCATCCGGTGGATTCAACTTTAGTTGA 1533 0.4866 MSLRPNERTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQLQQQQFPSALQASSILEKKLESLPAMVAGVWSDDNNQQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALIPLGKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCGRLVELLLHPSPSVLIPALRTVGNIVTGDDIQTQSIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNREQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDEDEALPPGDGAQPGFNFGGNELPVPSGGFNFS* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1266 510 Pfam Armadillo/beta-catenin-like repeat 224 251 IPR000225 GO:0005515
Dod03g1266 510 Pfam Armadillo/beta-catenin-like repeat 299 337 IPR000225 GO:0005515
Dod03g1266 510 Pfam Armadillo/beta-catenin-like repeat 383 420 IPR000225 GO:0005515
Dod03g1266 510 Pfam Armadillo/beta-catenin-like repeat 255 293 IPR000225 GO:0005515
Dod03g1266 510 Pfam Armadillo/beta-catenin-like repeat 339 378 IPR000225 GO:0005515
Dod03g1266 510 Pfam Armadillo/beta-catenin-like repeat 153 192 IPR000225 GO:0005515
Dod03g1266 510 Pfam Armadillo/beta-catenin-like repeat 111 151 IPR000225 GO:0005515
Dod03g1266 510 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Dod03g1266 510 SMART arm_5 339 379 IPR000225 GO:0005515
Dod03g1266 510 SMART arm_5 213 252 IPR000225 GO:0005515
Dod03g1266 510 SMART arm_5 110 151 IPR000225 GO:0005515
Dod03g1266 510 SMART arm_5 153 193 IPR000225 GO:0005515
Dod03g1266 510 SMART arm_5 296 337 IPR000225 GO:0005515
Dod03g1266 510 SMART arm_5 382 422 IPR000225 GO:0005515
Dod03g1266 510 SMART arm_5 254 294 IPR000225 GO:0005515
Dod03g1266 510 PANTHER IMPORTIN ALPHA 212 501 - -
Dod03g1266 510 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 223 265 IPR000225 GO:0005515
Dod03g1266 510 Gene3D - 11 50 IPR036975 GO:0006606
Dod03g1266 510 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 307 350 IPR000225 GO:0005515
Dod03g1266 510 PANTHER IMPORTIN SUBUNIT ALPHA 2 211 - -
Dod03g1266 510 PIRSF Importin_alpha 211 509 IPR024931 GO:0005737|GO:0006606|GO:0061608
Dod03g1266 510 PIRSF Importin_alpha 2 213 IPR024931 GO:0005737|GO:0006606|GO:0061608
Dod03g1266 510 MobiDBLite consensus disorder prediction 1 50 - -
Dod03g1266 510 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 164 206 IPR000225 GO:0005515
Dod03g1266 510 MobiDBLite consensus disorder prediction 1 56 - -
Dod03g1266 510 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 121 164 IPR000225 GO:0005515
Dod03g1266 510 Gene3D - 78 476 IPR011989 -
Dod03g1266 510 Pfam Atypical Arm repeat 437 481 IPR032413 -
Dod03g1266 510 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 350 378 IPR000225 GO:0005515
Dod03g1266 510 SUPERFAMILY ARM repeat 6 481 IPR016024 -
Dod03g1266 510 PANTHER IMPORTIN SUBUNIT ALPHA 212 501 - -
Dod03g1266 510 PANTHER IMPORTIN ALPHA 2 211 - -
Dod03g1266 510 Pfam Importin beta binding domain 12 100 IPR002652 GO:0006606|GO:0061608
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1266 Dod-Chr3 16012598 16016240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1266 136 371 U-box Gene Family AT3G46510 23.507 5.97e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1266 K15042 - gmx:100808498 945.266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1266 03 16012598 16016240 Dod03g1266 03 16012598 16016240 ECH
Dod05g2628 05 52517373 52521764 Dod03g1266 03 16012598 16016240 PCT