Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1257 ATGGCACCTCGACGATCCTCCTTAAAGCCGTTGCATTGGAGTAAGGTTACAAGGGCACTACAAGGAGGTTTATGGGAAGCCATTGATGGTTCTCTCCTAAAGCACTATTTTATCTGTTTCTTTCGAATACGCTTCACCATTCTTAGCAACCTTAGATCTGAGCTGAATTCGCTTCGATTTCCTGTTTTTTTTTCCTTCCTCAATTTCGCCATTCGCGTTTGGAATTTCAAACGCATTGTCCAAACTGTGTCCCTAACTGGTGACTCAGTTCAGCGTGTTGTGGCCTATTTTGCAGATGGTCTTGCTGCAAGGCTCCTCACAAGGAAGTCCCCATTCTATGACATGCTCATGGAGGAGCCAACACACGAGGAAGAGTTTCTTGCATTCACTGATCTCTATAGAGTCTCACCTTACTACCAATTTGCACATTTCACTGCAAACCAGGCGATCTTGGAGGCATTTGAGGAAGAGGAAGAAAAGAACAACCGTGCACTGCAAACTATGGCTTCCAATGGCCTTCTCTTATTCAGTCACTCTCTGAGAAGGCGACAAATGGCAACCGCATATTACTCAAGATCACAGGATTTGGGAACAACCTCAAGGAGCTTCAAGAAACTGAGTCTAGATTGGGGTTCAAGGATCATGAACCTAAGGAAAAAGAAGAATGAAACCGTGGCTGTGAACCTTGTTTCCTATTTGAACACTTTGAGGAGTTTCATGAAGATATTTGACACATTGGGATTTGTTCATTCTCTCAACCCTTCCGTAGTGGTGTTGGTGAAACAAGAAGGTAGCAGGAGCATTAGGACCTTCTTGTCAAGGTTCACAGAGTCTTTGCACTATTTTGCAGCCATGTTTGATTCACTGGATGACTGTCTTCCACTTGAGAGCACCAAGAGGCTCACGATTGAGAAGAAGCTTGGAATCGTGGATTGTCCAAATATGAGAGGATGGAAGCATGGAAAGCAAGAATGGAGAATCATGGGTTTGGTGGAGCAAAGATAA 1005 0.4408 MAPRRSSLKPLHWSKVTRALQGGLWEAIDGSLLKHYFICFFRIRFTILSNLRSELNSLRFPVFFSFLNFAIRVWNFKRIVQTVSLTGDSVQRVVAYFADGLAARLLTRKSPFYDMLMEEPTHEEEFLAFTDLYRVSPYYQFAHFTANQAILEAFEEEEEKNNRALQTMASNGLLLFSHSLRRRQMATAYYSRSQDLGTTSRSFKKLSLDWGSRIMNLRKKKNETVAVNLVSYLNTLRSFMKIFDTLGFVHSLNPSVVVLVKQEGSRSIRTFLSRFTESLHYFAAMFDSLDDCLPLESTKRLTIEKKLGIVDCPNMRGWKHGKQEWRIMGLVEQR* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1257 334 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 211 306 IPR005202 -
Dod03g1257 334 PANTHER OSJNBA0084A10.13 PROTEIN 77 158 - -
Dod03g1257 334 Pfam GRAS domain family 214 307 IPR005202 -
Dod03g1257 334 Pfam GRAS domain family 76 158 IPR005202 -
Dod03g1257 334 ProSiteProfiles GRAS family profile. 42 334 IPR005202 -
Dod03g1257 334 PANTHER OSJNBA0084A10.13 PROTEIN 211 306 - -
Dod03g1257 334 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 77 158 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1257 Dod-Chr3 15897388 15900409 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1257 68 315 GRAS Transcription Factor Family AT2G04890 28.467 3.08e-24 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dod03g1257 GRAS 9.1e-20 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1257 - - gmx:100809458 298.516