Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1252 ATGGGGAGAACTCCTTGTTGTGAGAAAGTGGGGTTGAAGAAAGGAAGATGGACTGCTGAGGAGGATAAGATCTTGACCGATTACATCCAGGAAAACGGTGAAGGATCATGGAGGTCCTTGCCCAAGAATGCAGGTTTGTTGAGGTGTGGGAAGAGCTGCAGACTAAGATGGATCAACTATTTGAGATCAGACGTGAAGAGAGGCAACATCACCCCAGAAGAGGAAGAGATCATTGTCAAGTTGCATGCTGTTCTTGGTAACAGGTGGTCTGTAATAGCAGGACATTTACCAGGAAGAACAGACAATGAGATAAAAAATTATTGGAACTCTCATCTGAGGAGAAAGATTTACTGCTTCATGAGATCTTTGAATGAGTCTCTCCCACCCATTAACATAGCTGCTGTAAATGTTGCATCCAAGAGAAGAGGTAGAGGGACAAGAAATCAAGAGGAAAAGAACTTGCCTTTAGGCCAAAACTCCCTTGATGAGCCAATGCCTAAAAGTAAAGCAACTTCACAGAGTTGCGATGGAGGAGATGATGAGGCTAACGAGATTTCAATGATGGATGCTTACTATGAAATGGAAGGCAACAAAAATGGTACATTTGGATCATACCCCAGTTTGAACAATGGAGGTGTTGAGGGGTTGGGACCATATCACTGGTCAGATGATGAAATCATGAGACTTAGTCAGATGTTTGAAAATGGGGTGCTTGTAAATCAAGCAGTTGGTGGGAATAATAATGTTTCCCTTAAGGAGGAGCCTAATGGAAATGAGTATGGTGATCAAATGATGCATGTGGATGCAATGGGAACAAGTGAGGAGAGCAACAAGAGTGGTGTTTGGTGCTCTTCAAATGCTGACAGTGGAGATTGGTACACTAGTTGTTCATCAGGCAACTCTGCCAGTGATTATCCGTGGCTTGATTGGGATTTGGCAGGTAGTGCTCAATCCGATAATCAGTGGGACCTTTGTGAAGATGACCAGATGGTGACTTCCTTGTGGGGTGCCAGCAATGATGTTTATGGTTTTTGCCAGTACTAG 1044 0.4368 MGRTPCCEKVGLKKGRWTAEEDKILTDYIQENGEGSWRSLPKNAGLLRCGKSCRLRWINYLRSDVKRGNITPEEEEIIVKLHAVLGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMRSLNESLPPINIAAVNVASKRRGRGTRNQEEKNLPLGQNSLDEPMPKSKATSQSCDGGDDEANEISMMDAYYEMEGNKNGTFGSYPSLNNGGVEGLGPYHWSDDEIMRLSQMFENGVLVNQAVGGNNNVSLKEEPNGNEYGDQMMHVDAMGTSEESNKSGVWCSSNADSGDWYTSCSSGNSASDYPWLDWDLAGSAQSDNQWDLCEDDQMVTSLWGASNDVYGFCQY* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1252 347 Gene3D - 13 66 - -
Dod03g1252 347 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod03g1252 347 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod03g1252 347 PANTHER MYB TRANSCRIPTION FACTOR 2 305 - -
Dod03g1252 347 CDD SANT 16 61 IPR001005 -
Dod03g1252 347 MobiDBLite consensus disorder prediction 140 181 - -
Dod03g1252 347 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dod03g1252 347 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 305 - -
Dod03g1252 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod03g1252 347 SMART sant 66 114 IPR001005 -
Dod03g1252 347 SMART sant 13 63 IPR001005 -
Dod03g1252 347 Gene3D - 71 116 - -
Dod03g1252 347 CDD SANT 71 112 IPR001005 -
Dod03g1252 347 MobiDBLite consensus disorder prediction 164 179 - -
Dod03g1252 347 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod03g1252 347 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Dod03g1252 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1252 Dod-Chr3 15831976 15836737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1252 1 324 MYB Transcription Factor Family AT5G49330 45.014 8.31e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod03g1252 Myb_DNA-binding 4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1252 K09422 - gmx:100819041 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1252 03 15831976 15836737 Dod03g1252 03 15831976 15836737 ECH