Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1244 ATGATGGCCGTACAACAAAACTTAACTGGGCAGCTTGTGGGCTCTGAGATACATGGCTTCCACACATTGCAGGATCTGGATGTTGAAAACACTATGGAGGAAGCAAAAAGCAGATGGCTTCGTCCCAATGAGATTCATGCCATACTCTTTAATCACAAATATTTCACGATCCATGTCAAGCCTGTGCATAGGCCCCAAAGTGGTACTATTGTATTATTTGACCGCAAGATGCTTAGGAATTTTCGCAAAGATGGGTACAACTGGAAAAAGAAAAATGATGGGAAAACTGTTAAAGAAGCACATGAGCACTTAAAAGTTGGTAATGAAGAAAGGATCCACGTATATTATGCACATGGCCAAGAAAACCCAAGCTTTGTTCGCAGATGTTATTGGTTGCTTGATAAGAGTCTGGAGCACATAGTCCTTGTTCATTATCGTGAAACACAGGAGTTGCAAAGTTCTCCTGTCACACCAGTAAATTCTAATTCTAGTTCTGTCTCCGATCCAATTACACCGTGGATTTTATCAGAAGAATTAGATTCTGGAACCAACACTGCTTATGCTGATGGACTTAATGACAATTTAACCGTCAAAAGTCATGAAATGAGGCTTCTTGAGATTAATACACTTGAATGGGACGACCTGGTAGTTTCAAATGATAACACATCTACCATACCCAATGGAGGAAATGTTCAATATTTGAATCAGCAAAATCAAGGTTTACTGAATGGAAGCTTTGGCAATGTTGCCAGCATTCTTTCTGCAGAAATTCCTTCTTTTGATAATTTAGCTCAGCCGATCACTGAGAGCAATAGTATTCCTTACAGTATTCCAGATAGCGCTAATCTTCAGAGGAATTCTCCGATCTCTTTGGGCGGTGTTGATTCCTTCAACACTATGGTTAATCAAGGCTTGCAAAGTCAGGACAGCTTTGGAATGTGGATAAACAACATTATATCTGATCCATCTTGTTCTGTAGATGTGTCAGCTCTTGAATCCTCTATTTCTTCATCTGTTCATGAATCATATTCATCACAGGTGCTCGGTAACCAGCAATCTTACCAATCTTCTCTGTCCGGACAAGTATTTACTGTCACCGACGTGTCCCCAGCATGGGCATCTTCCACTGAGAAAACTAAGATCCTTGTAACTGGATTATTTCATAATGACTATCAACACCTTGCAAAGTCCAATTTGTTCTGTGTCTGCGGTGATGTAACGATTCCCGTAGAAATTGTTCAGGTCGGGGTCTACCGATGCTGGGTATTACCACATTCTCCTGGATTTGTGAATCTCTATATGAGCTTCGATGGCCATAAGCCAGTTAGTCAAGTTGTTAATTTTGAGTATCGTACTCCTATTTTGCATGATCCTACTGCTTCTATGGAAGAGAAATACAACCGGGAAGAATTTCAGCTTCAGACTAGGCTTGCTCATTTGCTCTTTGATACAAAAAAGAGCCTTGATATTTTCTCTAGTAAAGTATCACCTAAGGCACTGAAAGAGGCTAAGAAATTCTCCGTCAAAACATCTTTTATGTCCAAAAGTTGGCAATACTTGATGAAGTCAGCTGAAGACAATACAATTCCATTTCCACAAGCAAAAGAAGACTTGTTTCTAATTGCTTTGAAAAACAGATTAAAGGAATGGCTTTTGGAACGAATTGGCTTAGGCATGAAGACTACTGAATATGATACACAAGGCCAAGGTGTAATTCACTTGTGTGCAATTCTGGGATATACTTGGGCTGTTTCCTTATTTTCATGGTCAGGCTTGTCGCTGGATTTCCGTGACAAATTTGGATGGACAGCCCTTCATTGGGCAGCATATTATGGAAGGGAGAAAATGGTTGCAACTCTCTTATCTTTTGGGGCGAGGCCAAACTTGGTCACAGATCCAACTCCTAAAAATCCTGGTGGATGTACTGCCGCTGATCTTGCTTATAAGAACGGCTATGATGGCTTAGCAGCTTATCTTTCGGAAAAGGCTCTGGTTGAACAGTTCAATGACATGAGCTTAGCTGGAAACATCAGTGGCAAACTGGAAATCTCAACAGATACAGGAAATGCTGAGAACCTTACTGAGGACCAACTGTATCTAAAGGACACATTAGCAGCTTACCGAACTGCAGCGGAGGCAGCAGCACGCATACAATCTGCATTTAGGGAGCATTCACTAAATTTGCGATCTCAGGCAGTTGAATTTTGCAGCCCAGAGGCTGAAGCACGCCAAATAGTAGCAGCGATGAAGATTCAACATGCCTTTCGCAACTTTGAGTCAAGGAAAATGATGGCAGCTGCTGCCCGAATCCAACATTCATACCGTACATGGAAATTCCGTAGAGACTTTCTCCACATGCGACGTCAGGCTATTAAAATTCAAGCTGCTTTCAGGGGCTTTCAAACACGGAGGCAGTATCGCAAAATAATTTGGTCGGTTGGAGTGCTTGAGAAAGCAATCCTGCGATGGCGTTTAAAGAGGAAAGGGTTCCGCGGTCTCCAGGTCAATCCTGTCCAAGAAATGAAAGATGAGAGGCAGGAAAGTGATGCAGAGGAGGACTTCTTTAGGACTAGTAGGAGACAAGCTGAGGAACGCATTGAGAGGTCTGTAGTACGTGTACAAGCCATGTTCCGCTCTAAGAAAGCACAAGAAGAGTATAGGAGGATGAAGGTGGCCCATACTCAAGCAAAGGTGACTAATGCAAAGAAATTTTTGCATGCGTCTGGAGTTCATTGA 2736 0.4203 MMAVQQNLTGQLVGSEIHGFHTLQDLDVENTMEEAKSRWLRPNEIHAILFNHKYFTIHVKPVHRPQSGTIVLFDRKMLRNFRKDGYNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGQENPSFVRRCYWLLDKSLEHIVLVHYRETQELQSSPVTPVNSNSSSVSDPITPWILSEELDSGTNTAYADGLNDNLTVKSHEMRLLEINTLEWDDLVVSNDNTSTIPNGGNVQYLNQQNQGLLNGSFGNVASILSAEIPSFDNLAQPITESNSIPYSIPDSANLQRNSPISLGGVDSFNTMVNQGLQSQDSFGMWINNIISDPSCSVDVSALESSISSSVHESYSSQVLGNQQSYQSSLSGQVFTVTDVSPAWASSTEKTKILVTGLFHNDYQHLAKSNLFCVCGDVTIPVEIVQVGVYRCWVLPHSPGFVNLYMSFDGHKPVSQVVNFEYRTPILHDPTASMEEKYNREEFQLQTRLAHLLFDTKKSLDIFSSKVSPKALKEAKKFSVKTSFMSKSWQYLMKSAEDNTIPFPQAKEDLFLIALKNRLKEWLLERIGLGMKTTEYDTQGQGVIHLCAILGYTWAVSLFSWSGLSLDFRDKFGWTALHWAAYYGREKMVATLLSFGARPNLVTDPTPKNPGGCTAADLAYKNGYDGLAAYLSEKALVEQFNDMSLAGNISGKLEISTDTGNAENLTEDQLYLKDTLAAYRTAAEAAARIQSAFREHSLNLRSQAVEFCSPEAEARQIVAAMKIQHAFRNFESRKMMAAAARIQHSYRTWKFRRDFLHMRRQAIKIQAAFRGFQTRRQYRKIIWSVGVLEKAILRWRLKRKGFRGLQVNPVQEMKDERQESDAEEDFFRTSRRQAEERIERSVVRVQAMFRSKKAQEEYRRMKVAHTQAKVTNAKKFLHASGVH* 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1244 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 712 813 IPR027417 -
Dod03g1244 911 Gene3D - 532 670 IPR036770 -
Dod03g1244 911 Pfam CG-1 domain 34 147 IPR005559 GO:0003677
Dod03g1244 911 SMART ANK_2a 600 629 IPR002110 GO:0005515
Dod03g1244 911 SMART ANK_2a 639 670 IPR002110 GO:0005515
Dod03g1244 911 ProSiteProfiles IQ motif profile. 763 792 IPR000048 GO:0005515
Dod03g1244 911 SUPERFAMILY Ankyrin repeat 537 662 IPR036770 -
Dod03g1244 911 Gene3D Immunoglobulins 357 454 IPR013783 -
Dod03g1244 911 Pfam Ankyrin repeats (3 copies) 547 629 IPR002110 GO:0005515
Dod03g1244 911 ProSiteProfiles CG-1 DNA-binding domain profile. 28 154 IPR005559 GO:0003677
Dod03g1244 911 SUPERFAMILY E set domains 364 451 IPR014756 -
Dod03g1244 911 Gene3D - 761 810 - -
Dod03g1244 911 ProSiteProfiles IQ motif profile. 866 895 IPR000048 GO:0005515
Dod03g1244 911 Pfam IQ calmodulin-binding motif 788 807 IPR000048 GO:0005515
Dod03g1244 911 ProSiteProfiles Ankyrin repeat profile. 600 632 IPR002110 GO:0005515
Dod03g1244 911 SMART iq_5 785 807 IPR000048 GO:0005515
Dod03g1244 911 SMART iq_5 865 887 IPR000048 GO:0005515
Dod03g1244 911 SMART iq_5 743 765 IPR000048 GO:0005515
Dod03g1244 911 ProSiteProfiles Ankyrin repeat region circular profile. 600 628 - -
Dod03g1244 911 ProSiteProfiles IQ motif profile. 786 810 IPR000048 GO:0005515
Dod03g1244 911 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 17 900 - -
Dod03g1244 911 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 17 900 - -
Dod03g1244 911 ProSiteProfiles IQ motif profile. 744 773 IPR000048 GO:0005515
Dod03g1244 911 SMART CG_1_2 32 149 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1244 Dod-Chr3 15721047 15732859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1244 32 898 CAMTA Transcription Factor Family AT3G16940 55.683 0.0 937
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Dod03g1244 CG-1 2.8e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1244 K21596 - gmx:100819198 1340.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1244 03 15721047 15732859 Dod03g1244 03 15721047 15732859 ECH
Dod05g2616 05 52405060 52413187 Dod03g1244 03 15721047 15732859 PCT