Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1207 ATGGCATCAGCAAGCAGAGCAACAAACTCAGTACCCCAACAACAACAACAACAACAACAACAACGAGGAATCCTTAACACTACCACAACGACATCATCAACATCAAAACGCGCCGTTTACCCGAGCAACGAGTCAATCAGCAAGGCCATAGCTCAGTACACCGAAGACGCGCGCCTCCACGCCGTCTTCGAGCAGTCCAGCGAGTCCGGCAAGTCCTTCGACTACTCCCACTCCGTCCGCCTCAACGCCTCCGAGTCCATCCCGGAGCATCAGATCACCGCCTACCTCCTCAAGATCCAGCGCGGCGGCTTCATCCAGCCTTTCGGCTGCATGATCGCCGTCGACGAGCCCTCCTTCCGCGTTATCGGATACTCCGAGAACGCCCGGGAGATGCTCGGCATATCGCCTCAGTCGGTCCCGACGCTGGAGCGTCTCCCCGGGGGTGGGAATTCCCTTTCCCCCGAGGAGGAGCTCTATGTAGGAGCCGACGTGCGCGCTCTTTTTGCCCCCTCGAGCAGCACGCTGCTCGATAGGGCGTTCGGGGCGCGTGAAATCACGCTCCTGAACCCGCTTTGGATTCATTCTAGAAGCTCGGGGAAGCCTTTTTATGGAATTTTACACCGAATTGATGTTGGTATTGTCATTGATTTGGAGCCAGCTAGGACTGAGGACCCTGCACTGTCTATTGCAGGTGCCGTACAGTCTCAGAAGCTTGCTGTTAGGGCGATTTCGCAGCTTCAGTCTCTTCCTGGTGGCGATGTGAAGCTTCTTTGTGACACTGTGGTTGAGAGTGTGAGGGAATTGACTTGTTATGATAGGGTTATGGTGTATAAGTTTCACGAGGATGAGCATGGTGAGGTTGTTGCTGAGAGTAAGAGGCCTGATTTGGAGCCTTACATTGGTTTGCATTACCCTGCTACTGATATACCTCAGGCTTCTAGGTTTTTGTTTAAGCAGAATAGGGTTAGGATGATTGTGGATTGCCATGCTTCACCTGTGAGGGTGGTGCAGGATGAGGCACTCGTGCAGCCCTTGTGTTTAGTTGGGTCCACGCTGCGCGCCCCGCACGGCTGCCATGCTCAGTATATGGAGAATATGGGGTCGATTGCTTCATTGGTTATGGCGGTCATCATTAATGCGAATGATGAGGAGGCTGTTGGCCGCCGCAGCTCGATGAGGCTCTGGGGTTTGGTTGTTTGCCACCATACTTCAGCTAGGTGTATACCTTTTCCATTGAGGTATGCTTGCGAGTTTTTGATGCAGGCCTTTGGACTGCAATTGAATATGGAGCTTCAGTTGGCGGCACAGGCGTTGGAGAAGCGAGTTTTGAGGACGCAGACTCTGTTGTGTGACATGCTTCTTAGGGACTCCCCTACTGGCATTGTTACTCAGAGTCCTAGTGTTATGGACTTGGTGAAGTGTGATGGTGCAGCTTTGTATTACCAGGGAAACTACTATACCTTGGGTGTAACGCCGACTGAGTCTCAGATAAGGGATATCATAGAGTGGTTGTTGGCTTACCATGGAGATTCGACTGGTCTGAGTACTGATAGTCTGGCTGATGCAGGGTATCCTGGTGCTGCATCGCTTGGTGATGCAGTTTGTGGGATGGCTGTTGCTTATATCACTGAGACAGATTTCCTATTCTGGTTCAGATCCCACACGGCAAAGGAGATCAAATGGGGTGGTGCTAAGCATCACCCGGAGGATAAGGATGATGGACAGAGAATGCACCCCCGTTCTTCATTCAAGGCATTTTTGGAAGTGGTCAAAAGCCGCAGTTTGCCATGGGAGAATGCAGAAATGGATGCAATTCACTCTTTGCAGCTTATTCTGCGAGACTCATTTAGAGATGTTGAGCATAGCAATTCTAAGGCTGTTGTACATTCCCATTTGGCGGAACTAGAGTTGCAAGGGGTAGATGAACTGAGTTCTGTGGCTAGAGAAATGGTTAGATTGATAGAAACTGCCACTGCTCCCATATTTGCCGTTGATATTGATGGCCGAATAAATGGGTGGAATGCAAAGGTTTCAGAATTGACCGGACTCCCGGTTGAGGAGGCTATGGGGAAGTCATTGGTTCATGATCTTGTGTATAAGGAGTCTGAAGAAACTGTAGACAAGCTTCTCTCTCGTGCTTTAAGAGGTGAAGAAGATAAGAATGTGGAGATAAAAATGAAGACGTTTGGCCCAGAACACCAGAATAATGCAGTTTTTGTAGTCGTAAATGCTTGCTCCAGCAAGGATTATACAAATAATATAGTTGGAGTATGCTTTGTTGGTCAGGATGTTACTGGTCAGAAGGTTGTAATGGACAAATTCATTAACATACAAGGTGACTACAAGGCTATTGTACATAGTCCAAATCCATTGATCCCTCCCATTTTTGCATCGGATGATAACACTTGTTGCTTAGAGTGGAACACTGCCATGGAAAAGCTTACTGGTTGGGGCCGTGCAGATGTCATTGGAAAAATGTTGGTTGGAGAGGTTTTCGGTAGTTGCTGTCAGTTAAAGGGCTCGGATGCTTTGACAAAGTTCATGATTGTCTTGCACAACGCCCTTGGTGGACAAGATACTAATAAATTCCCTTTTTCATTTCTTGACCGGCATGGAAAATATGTGCAAGCTTTCTTGACTGCAAACAAGAGGGTTAACATGGATGGCCAGATTATTGGAGCTTTTTGCTTTTTGCAAATTGGAAGTCCTGAAATTCAACAGGCTCTGAAAGTCCAGAGACAACAGGAGAAGAATTGCTATGCTAGGATGAAAGAGTTAGCTTATATTTGTCAAGAAGTAAAGAACCCCCTGAGTGGCATACGCTTTACAAACTCTCTTTTGGAGGCTACTGGCTTGACTGATGAGCAAAAGCAGTTTCTTGAAACTAGTACCGCTTGTCAGAAGCAACTGTTAAAAATAATACGGGACATTGACCTGGAAAGCATCGAAGATGGGTCATTGGAGCTTGAAAAGGCGGAATTCTTGCTTGGGAATGTCATAAATGCAGTTGTTAGCCAAGTAATGCTATTACTAAGAGAGAGAAATTTACAGTTGATTCGTGATATTCCTGAAGAAATCAAGACATTGGCTGTTTACGGTGATCAATTGAGGATTCAACAAGTCTTGGCTGATTTCTTATTGAATATGGTGCGCTATGCACCTTCTCCTGATGGCTGGGTAGAGATTCATGTAGTTCCAAGAATAACACAAATTTCTGATGGACTTACTCTTCTCCATGCTGAATTTAGGATGGTATGTCCAGGCAAAGGTCTTCCTCCTGAACTGGTTCAAGACATGTTCCATAACAGTCAATGGGTGACTCAAGAAGGCTTGGGCCTGAGCATGAGCAGGAAGATTCTTAAGTTAATGAATGGTGAAGTCCAATATATCAGGGAAGCAGAACGATGCTACTTCTTTGTTCTTCTTGAACTACCTGTGACACGGAGAAGCTACTCTAAAGGTGTTAATTAG 3471 0.4696 MASASRATNSVPQQQQQQQQQRGILNTTTTTSSTSKRAVYPSNESISKAIAQYTEDARLHAVFEQSSESGKSFDYSHSVRLNASESIPEHQITAYLLKIQRGGFIQPFGCMIAVDEPSFRVIGYSENAREMLGISPQSVPTLERLPGGGNSLSPEEELYVGADVRALFAPSSSTLLDRAFGAREITLLNPLWIHSRSSGKPFYGILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKLLCDTVVESVRELTCYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASPVRVVQDEALVQPLCLVGSTLRAPHGCHAQYMENMGSIASLVMAVIINANDEEAVGRRSSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAAQALEKRVLRTQTLLCDMLLRDSPTGIVTQSPSVMDLVKCDGAALYYQGNYYTLGVTPTESQIRDIIEWLLAYHGDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITETDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDVEHSNSKAVVHSHLAELELQGVDELSSVAREMVRLIETATAPIFAVDIDGRINGWNAKVSELTGLPVEEAMGKSLVHDLVYKESEETVDKLLSRALRGEEDKNVEIKMKTFGPEHQNNAVFVVVNACSSKDYTNNIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHSPNPLIPPIFASDDNTCCLEWNTAMEKLTGWGRADVIGKMLVGEVFGSCCQLKGSDALTKFMIVLHNALGGQDTNKFPFSFLDRHGKYVQAFLTANKRVNMDGQIIGAFCFLQIGSPEIQQALKVQRQQEKNCYARMKELAYICQEVKNPLSGIRFTNSLLEATGLTDEQKQFLETSTACQKQLLKIIRDIDLESIEDGSLELEKAEFLLGNVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLADFLLNMVRYAPSPDGWVEIHVVPRITQISDGLTLLHAEFRMVCPGKGLPPELVQDMFHNSQWVTQEGLGLSMSRKILKLMNGEVQYIREAERCYFFVLLELPVTRRSYSKGVN* 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1207 1156 PRINTS Phytochrome signature 762 782 IPR001294 GO:0006355|GO:0009584
Dod03g1207 1156 PRINTS Phytochrome signature 268 287 IPR001294 GO:0006355|GO:0009584
Dod03g1207 1156 PRINTS Phytochrome signature 461 481 IPR001294 GO:0006355|GO:0009584
Dod03g1207 1156 PRINTS Phytochrome signature 579 597 IPR001294 GO:0006355|GO:0009584
Dod03g1207 1156 PRINTS Phytochrome signature 668 683 IPR001294 GO:0006355|GO:0009584
Dod03g1207 1156 PRINTS Phytochrome signature 168 190 IPR001294 GO:0006355|GO:0009584
Dod03g1207 1156 PRINTS Phytochrome signature 353 374 IPR001294 GO:0006355|GO:0009584
Dod03g1207 1156 PRINTS Phytochrome signature 742 759 IPR001294 GO:0006355|GO:0009584
Dod03g1207 1156 PRINTS Phytochrome signature 546 565 IPR001294 GO:0006355|GO:0009584
Dod03g1207 1156 PRINTS Phytochrome signature 649 665 IPR001294 GO:0006355|GO:0009584
Dod03g1207 1156 CDD HATPase_Phy-like 1032 1144 IPR044767 -
Dod03g1207 1156 Gene3D - 234 592 IPR029016 -
Dod03g1207 1156 SUPERFAMILY GAF domain-like 439 616 - -
Dod03g1207 1156 Gene3D - 903 984 - -
Dod03g1207 1156 Gene3D - 436 609 IPR043150 -
Dod03g1207 1156 PANTHER TWO-COMPONENT HISTIDINE KINASE 29 1149 - -
Dod03g1207 1156 Gene3D PAS domain 793 902 - -
Dod03g1207 1156 SMART pas_2 648 715 IPR000014 -
Dod03g1207 1156 SMART pas_2 779 849 IPR000014 -
Dod03g1207 1156 SMART pas_2 98 169 IPR000014 -
Dod03g1207 1156 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 253 421 IPR016132 -
Dod03g1207 1156 SMART HKATPase_4 1033 1148 IPR003594 -
Dod03g1207 1156 CDD HisKA 921 977 IPR003661 GO:0000155|GO:0007165
Dod03g1207 1156 Gene3D PAS domain 98 356 - -
Dod03g1207 1156 SMART HisKA_10 921 985 IPR003661 GO:0000155|GO:0007165
Dod03g1207 1156 PANTHER PHYTOCHROME 29 1149 - -
Dod03g1207 1156 Pfam PAS fold 780 899 IPR013767 GO:0006355
Dod03g1207 1156 Pfam PAS fold 649 764 IPR013767 GO:0006355
Dod03g1207 1156 CDD PAS 657 764 IPR000014 -
Dod03g1207 1156 PIRSF Phytochrome_conventional 25 1153 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Dod03g1207 1156 Pfam His Kinase A (phospho-acceptor) domain 925 985 IPR003661 GO:0000155|GO:0007165
Dod03g1207 1156 MobiDBLite consensus disorder prediction 1 40 - -
Dod03g1207 1156 SUPERFAMILY GAF domain-like 233 428 - -
Dod03g1207 1156 ProSiteProfiles PAS repeat profile. 780 832 IPR000014 -
Dod03g1207 1156 Pfam PAS fold 94 220 IPR013654 GO:0006355
Dod03g1207 1156 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1033 1140 IPR003594 -
Dod03g1207 1156 ProSiteProfiles PAS repeat profile. 646 717 IPR000014 -
Dod03g1207 1156 SUPERFAMILY PYP-like sensor domain (PAS domain) 653 761 IPR035965 -
Dod03g1207 1156 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 912 977 IPR036097 GO:0000155|GO:0007165
Dod03g1207 1156 SUPERFAMILY PYP-like sensor domain (PAS domain) 794 897 IPR035965 -
Dod03g1207 1156 Pfam Phytochrome region 444 616 IPR013515 GO:0006355|GO:0009584
Dod03g1207 1156 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 996 1144 IPR036890 -
Dod03g1207 1156 ProSiteProfiles Histidine kinase domain profile. 928 1148 IPR005467 -
Dod03g1207 1156 CDD PAS 791 899 IPR000014 -
Dod03g1207 1156 Gene3D PAS domain 641 774 - -
Dod03g1207 1156 ProSitePatterns Phytochrome chromophore attachment site signature. 353 362 IPR013516 -
Dod03g1207 1156 Pfam GAF domain 254 431 IPR003018 GO:0005515
Dod03g1207 1156 Gene3D - 985 1151 IPR036890 -
Dod03g1207 1156 TIGRFAM sensory_box: PAS domain S-box protein 653 768 IPR000014 -
Dod03g1207 1156 SUPERFAMILY PYP-like sensor domain (PAS domain) 99 221 IPR035965 -
Dod03g1207 1156 SMART gaf_1 253 441 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1207 Dod-Chr3 15108941 15117025 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1207 4 1146 Histidine Kinase Gene Family AT4G16250 72.830 0.0 1745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1207 K12121 - gmx:100799831 2000.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1207 03 15108941 15117025 Dod03g1207 03 15108941 15117025 ECH