Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1179 ATGGATGTGAAAGGAAGGGTAAGCAACCCCAACAGTACCACCATCATTCAAGAGGACGACATGGACCTCCGAAGAGGCCCTTGGACCGTCGATGAGGATCTTGCCCTCATCAATTACATTGCCACTCATGGCGAAGGTCGCTGGAACTCCCTTGCTCGCTCTGCTGGACTCAAGCGAACCGGCAAGAGCTGCAGGTTGAGATGGTTGAATTATCTGCGCCCCGATGTTCGACGTGGTAACATTACACTTGAAGAACAGCTTCTTATTCTCGAGCTCCATGCTCGATGGGGAAATCGATGGTCCAAAATTGCTCAGTATTTGCCTGGTAGAACCGATAATGAGATTAAAAACTATTGGAGAACGCGCGTCCAAAAGCATGCCAAGCAGCTCAAGTGTGACGTGAATAGCAAGCAATTCAAGGACACCATGCGCTACCTTTGGATGCCAAGGCTGGTGGAGCGCATTCAAGCCGCGGCAGCTGCCAGTGCCACGGCCGCCGCCACCGCCACTGCCACCGGATCTCCAACCTTGTCTGCCACCACAACCGTCGCCACCACCAATACTACTGCCACATACAACTACGACAACATCAACAACCTTAACAGCAATTTTGAGGTTCATAGTGGGAACATGATGTTAGCCGCCACCCCGGCAATTATGAGCAACAACTATAGTAGTAATTCAAATGTTACCCAAAATTATGCCTACTCCAGATAA 717 0.5035 MDVKGRVSNPNSTTIIQEDDMDLRRGPWTVDEDLALINYIATHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHARWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLVERIQAAAAASATAAATATATGSPTLSATTTVATTNTTATYNYDNINNLNSNFEVHSGNMMLAATPAIMSNNYSSNSNVTQNYAYSR* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1179 238 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Dod03g1179 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 76 IPR017930 -
Dod03g1179 238 SUPERFAMILY Homeodomain-like 22 119 IPR009057 -
Dod03g1179 238 SMART sant 77 125 IPR001005 -
Dod03g1179 238 SMART sant 24 74 IPR001005 -
Dod03g1179 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 127 IPR017930 -
Dod03g1179 238 CDD SANT 27 72 IPR001005 -
Dod03g1179 238 Gene3D - 22 78 - -
Dod03g1179 238 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Dod03g1179 238 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 234 IPR044676 GO:0003700|GO:0006355|GO:0043565
Dod03g1179 238 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Dod03g1179 238 Pfam Myb-like DNA-binding domain 78 121 IPR001005 -
Dod03g1179 238 Gene3D - 82 145 - -
Dod03g1179 238 PANTHER MYB TRANSCRIPTION FACTOR 1 234 - -
Dod03g1179 238 CDD SANT 93 121 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1179 Dod-Chr3 14738441 14740794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1179 1 235 MYB Transcription Factor Family AT3G06490 66.383 3.75e-89 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod03g1179 Myb_DNA-binding 3.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1179 K09422 - gmx:100305347 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1179 03 14738441 14740794 Dod03g1179 03 14738441 14740794 ECH