Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1156 ATGTACTCTTGCAGCCAAGAGGGTTCTTCTCTTCTACTCCTGATGGGTGCTCCTAAGCAGAAATGGACGGCAGAAGAGGAAGCAGCTCTTAAAGCTGGGGTTGTCAAGCATGGCGTGGGTAAATGGCGTACAATACTCAAGGATCCTGAATTTAGCAGTGTCTTATATCTGCGGTCCAATGTGGATCTCAAGGATAAATGGAGAAATCTGAGTGTGATGGCAAACGGATGGAGTTCCAGGGAGAAGTCTAGGTTAGCCATCAAAAGGGTGCATCAGGCCCCAAAACAGGATGAGAACTCCATGGCTGTCACTCCTGTTATTCCCAGTGATGAAGAAATTGTTGATGTTAAGCCTCTTCAAGTTTCTAGAGAGATGGTGCCAATTACTGGTCCAAAAAGGTCTATTGTAAGATTGGATAACCTTATAATGGAAGCAATAACCACTTTGAAGGAAAATGGTGGTTCTAATAAGACAACTATTGCAGCTTTCATAGAGGACCAATATTGGGCACCGCCCGACTTCAAAAGGTTGTTGTCAGCAAAATTGAAGTTTTTGACAGCAAATGGAAAACTGGTCAAGGTAAAACGCAAGTATAGGATTGCTCCTACTCCAGCATATTCTGACAGAAGAAGAAACTCATCCTTGTTATTAATGGATGGGAGGCAGAAAGCCTCTTTTAAAGTTGACAGGGATGAGACTAATGTCCTTACAAAGTCTCAGATAGATTTAGAACTAGCAAAGTTAAGATCAATGTCTGCACAAGAGGCAGGCTGCAGTTGCTGCCCGAGCAGTTGCAGACGCAGAAGCTGCCATAGCAGAAGCCGAAGAGGCGGCAAGGGAGGCAGAGGCAGCAGAAGCTGA 861 0.4472 MYSCSQEGSSLLLLMGAPKQKWTAEEEAALKAGVVKHGVGKWRTILKDPEFSSVLYLRSNVDLKDKWRNLSVMANGWSSREKSRLAIKRVHQAPKQDENSMAVTPVIPSDEEIVDVKPLQVSREMVPITGPKRSIVRLDNLIMEAITTLKENGGSNKTTIAAFIEDQYWAPPDFKRLLSAKLKFLTANGKLVKVKRKYRIAPTPAYSDRRRNSSLLLMDGRQKASFKVDRDETNVLTKSQIDLELAKLRSMSAQEAGCSCCPSSCRRRSCHSRSRRGGKGGRGSRS* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1156 286 MobiDBLite consensus disorder prediction 268 286 - -
Dod03g1156 286 Gene3D - 132 211 IPR036388 -
Dod03g1156 286 SMART sant 18 73 IPR001005 -
Dod03g1156 286 SUPERFAMILY "Winged helix" DNA-binding domain 131 211 IPR036390 -
Dod03g1156 286 CDD SANT_TRF 20 70 - -
Dod03g1156 286 MobiDBLite consensus disorder prediction 267 286 - -
Dod03g1156 286 Gene3D - 22 100 - -
Dod03g1156 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 47 IPR017930 -
Dod03g1156 286 SMART h15plus2 132 197 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod03g1156 286 SUPERFAMILY Homeodomain-like 16 85 IPR009057 -
Dod03g1156 286 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 134 202 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod03g1156 286 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 15 256 - -
Dod03g1156 286 Pfam linker histone H1 and H5 family 139 195 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod03g1156 286 PANTHER SINGLE MYB HISTONE 4 15 256 IPR044597 GO:0003691
Dod03g1156 286 Pfam Myb-like DNA-binding domain 19 70 IPR001005 -
Dod03g1156 286 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1156 Dod-Chr3 14386880 14393639 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1156 15 254 Single Myb Histone (SMH) Gene Family AT1G49950 66.260 1.02e-104 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dod03g1156 Linker_histone 9.1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1156 K09422 - gmx:100780698 407.527