Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1117 ATGCAACGGCGCAGTGACCCATGTGGCAGTGGCACATTCTGTGACGTGCGGTGGTGGCTTAAAATGACAGAATTGTTCCCCGTCATTGTGGTTCACCAGCACATCGCCATCATTATGGTTCGCGCCATTGCTAGAGTCACCGCCATCAGCGCTAATCTTGACTCGCTGCCATTCAAGCTCATCCTAGGTGGTAACCATTATAGACCTGAGATATGGTTCATCCTGGAGTACCCACATCCAGATGACAACCAACGAAGGCAACTAGCCGCGGAGGTTGGGATTGAGCCGAAACAGGTGAAGTTTTGGTTTCAGAATAAGAGGACTCAACTCAAGAATCAACATGAGAGAGCAGATAACTCTGCTCTTCGGGCTGAGAATGAAAGGATACAAAACGAAAACCTCATGATGAAAGAGGCATTGAGCAATATACTTTGCCCAGCTTGTGGGGGTCCACCACGTTCAGGAGAAGATCATGAACACTACATGCAAAGCATGCAGCTAGAAAATGCTCAGCTAAAGGAAGAGGCAAGTAAACTCAGAGTGTCTGCCCTTCTTGCAAAGTTCTTTGAGAGTCATCAGGTGCTACCACCTGATCATGAGTTGCACCAGACAGCTGCTATTAATCCCATGGCAGGATTATCATATGGCTTATCACTTGGAAGCTTGCTCAACCAAGCGGCTGATGAAGGCCCTTCTTCCCTTAATCAAAACTTTGTTCCAAGAGTTGCTGCTGATAGTGACATGTTATTCAACCCCAACCAAACTATGCAGCAAATGCAAGGTGTAGTCATCATGGAAAAAGCACTGGCTTCTGAGCTTGGAGCTACTGCTTTGGATGAATTGGTTAGGCTTCTGCGTATCAATGAGCCCTTTTGGGTCAGCTCTTCAACTGTGGGTGGGAAGCTCGTTCTTCATAATGAAACCTATGAGAAGTTATTCCCCAGGGCCAACTGCTTCAAAGGTGCCAATTCTCGTATAGAATCATCAAAGGAATCAGGAATAGTGAGCATTAGTGGGATTCAGCTGGTTGACTTGTTTCTAGATTCGGAAAAATGGGCCAATCTCTTCCCAACAATTGTTACAAAAGCAGGAACGATTCATGTATATGAAAATGGTCTGCCAGAAAATCGAAGTGGAGCCTTACAGTTGATGTATGAAGAGATGCACATTCTTTCACCTCTAGTGTCATCCCGTGAATTTCACTTCCTTCGCTGCTGTCAACAAGTTGAAGCTGGAACATGGGTGATAGCAGATGTGTCATTTGATCCCATCCAAGAGAAACCCTGGCGTCTTTCTCGCTCTTGGAGACACCCATCTGGATGCATGATTCAGGACTGGCAAAATGGCTGTTCCATGGTTACTTGGATTGAACATGTGGAAGTGGATGACAAGATTCAAACACACCGGCTGTTCAGAGATCTTATTTGTACCAATCTTGCATATGGAGCAGAGAGATGGATTATGGAGCTTCAAAGAATGTGTGAGAGATCTGCTAGCTACTGTGTTGAAAAGATACCTAATCATGACTTGATGACTTCAATTGAAGGAAGGAGGAGTGTGATGAAGCTTTGTCAGAGAATGGTTAAGGTCTTTTGTGAAAGTTTGAACATGGCAGGCAAGCTTGGCTTCCCACACCCAACTGCGGAGAACAGTAGCGGGGTTAGGGTCTCAGTGCGCAAAAGCACAGAACTATGCATGCCAAATGGCACCATTATCATTGCTGCTACCTCCCTTTGGCTTCCTCTCCACTATCAGAAAGTTTTTGACTACTTAACAGATGTGAAAAAACGTATTCAGTGGGATGTTATTTCCTGTTCAACTCCGGTGCACAAGATTGCACAGATCCTAAATGGAGTTCATCCTGGCAACAATATTTCAATTATCCGGCCATTCATCCCCAGTGAGAACAATGCCTTGATTCTTCAAGAAAGCTTCATAAACCCGGCGGCGTCTTACATTGTGTATGCTCCAGCTGATGTATCAGCCATCAATGTCGTGGTAAATGGTGAGGACCCTTCAATGATACCAGTTCTTCCTTCAGGTTTCGTTATCTCCGGAGACGGGAGAACAAACAATAATGATGCACTTATGGGACCATTCATGAGCACCACTGGCAATGTTGATAACTTTGAAGGCTCTGTGTTGACTGTGGCATTCCAAATACTGGTTAGTAGTCCAGCTGGTTCCGGTCAGGTGAATATGGAATCTGTGGCTTCTGTCCACACCCTTTTGACCTCAACAGTTCAGAACATAAGGGAGGCTTTGAACTGCAACGGTTTGGAGTAA 2286 0.4532 MQRRSDPCGSGTFCDVRWWLKMTELFPVIVVHQHIAIIMVRAIARVTAISANLDSLPFKLILGGNHYRPEIWFILEYPHPDDNQRRQLAAEVGIEPKQVKFWFQNKRTQLKNQHERADNSALRAENERIQNENLMMKEALSNILCPACGGPPRSGEDHEHYMQSMQLENAQLKEEASKLRVSALLAKFFESHQVLPPDHELHQTAAINPMAGLSYGLSLGSLLNQAADEGPSSLNQNFVPRVAADSDMLFNPNQTMQQMQGVVIMEKALASELGATALDELVRLLRINEPFWVSSSTVGGKLVLHNETYEKLFPRANCFKGANSRIESSKESGIVSISGIQLVDLFLDSEKWANLFPTIVTKAGTIHVYENGLPENRSGALQLMYEEMHILSPLVSSREFHFLRCCQQVEAGTWVIADVSFDPIQEKPWRLSRSWRHPSGCMIQDWQNGCSMVTWIEHVEVDDKIQTHRLFRDLICTNLAYGAERWIMELQRMCERSASYCVEKIPNHDLMTSIEGRRSVMKLCQRMVKVFCESLNMAGKLGFPHPTAENSSGVRVSVRKSTELCMPNGTIIIAATSLWLPLHYQKVFDYLTDVKKRIQWDVISCSTPVHKIAQILNGVHPGNNISIIRPFIPSENNALILQESFINPAASYIVYAPADVSAINVVVNGEDPSMIPVLPSGFVISGDGRTNNNDALMGPFMSTTGNVDNFEGSVLTVAFQILVSSPAGSGQVNMESVASVHTLLTSTVQNIREALNCNGLE* 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1117 761 Coils Coil 162 182 - -
Dod03g1117 761 Gene3D - 71 131 - -
Dod03g1117 761 SMART HOX_1 63 117 IPR001356 GO:0003677
Dod03g1117 761 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Dod03g1117 761 Coils Coil 107 142 - -
Dod03g1117 761 SUPERFAMILY Bet v1-like 266 496 - -
Dod03g1117 761 Pfam Homeodomain 77 111 IPR001356 GO:0003677
Dod03g1117 761 Pfam START domain 275 496 IPR002913 GO:0008289
Dod03g1117 761 SMART START_1 272 496 IPR002913 GO:0008289
Dod03g1117 761 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 73 757 IPR042160 -
Dod03g1117 761 CDD START_ArGLABRA2_like 267 495 - -
Dod03g1117 761 SUPERFAMILY Bet v1-like 516 734 - -
Dod03g1117 761 SUPERFAMILY Homeodomain-like 76 120 IPR009057 -
Dod03g1117 761 Gene3D - 272 475 IPR023393 -
Dod03g1117 761 ProSiteProfiles 'Homeobox' domain profile. 70 113 IPR001356 GO:0003677
Dod03g1117 761 ProSiteProfiles START domain profile. 263 499 IPR002913 GO:0008289
Dod03g1117 761 CDD homeodomain 70 114 IPR001356 GO:0003677
Dod03g1117 761 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 73 757 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1117 Dod-Chr3 13865039 13877970 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1117 76 756 Homeobox Transcription Factor Family AT1G73360 43.314 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dod03g1117 START 3.4e-31 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1117 K09338 - gmx:100795075 798.505