Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1102 ATGTCAATGAATAATTCTCGCATGAACCTTGGGAGGCCTGCCTCAGGTAGAAGAAGATTGAAAGATTTATTGCAACAAAAGGATAATCGTTTTTGTGCTGATTGTAATGCTCCAGATCCTAAATGGGCGTCAGCCAACATTGGAGTATTTATTTGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTACTCATATATCAAAGGTTTTGTCAGTGACTTTGGATGAATGGTCAGATGATGAAATTGATGCAATGATGGAAGTTGGGGGGAATTCTTCTGCTAACTCAATTTATGAGGCTTATATTCCTGAAGGATATACAAAACCCGGACCGGATGCCAGTCATGAGCTGCGTGCAAAGTTTATACGCTCAAAGTATGAGTTGCAAGAATTTTTGAAACCTAGTTTGCGCATCGTGTCTGGAAAAAGCAGCAGCACTCTACAATCAAGTTCGGCGAAAGGTTTTATGGATAGTTTTCGAAGTAGTGCTGGAAGTTCACAGAGAATGGAAGGTATGGTGGAATTTATTGGAATGTTGAAGGTGAAAGTGATTAAAGGCACAAATTTAGCCATCAGAGATATAAAGACAAGTGATCCGTATGTTGTTTTGAACCTTGGCACGCAGACTGCCCAGACAACTGTAATGAAGAGTAACTTGAATCCAGTCTGGAATGAGGAACTTATGCTGTCTGTTCGTGAGCAATATGGACCGTTGAAATTGAAAGTGTTTGATCACGACATGTTTTCCGCCGATGATATAATGGGAGAGGCGGACATTGATCTTCAGCCCCTGCTAACATCTGCTATGGCATTCGGTGACGCTGGAATGTTTGGCGATATGCAGATTGGAAAATGGTTAAAATCTGATGACAATGCACTTGTTGAAGATAGTATAGTTAATATTATTGAAGGTAAGGTTAAACAGGCGATGTCACTCAAGCTTCAGAATGTTGAATCTGGAGAATTAGATCTAGAAATCGAGTGGATTCCCCTTGAACAATAG 1002 0.4052 MSMNNSRMNLGRPASGRRRLKDLLQQKDNRFCADCNAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSDDEIDAMMEVGGNSSANSIYEAYIPEGYTKPGPDASHELRAKFIRSKYELQEFLKPSLRIVSGKSSSTLQSSSAKGFMDSFRSSAGSSQRMEGMVEFIGMLKVKVIKGTNLAIRDIKTSDPYVVLNLGTQTAQTTVMKSNLNPVWNEELMLSVREQYGPLKLKVFDHDMFSADDIMGEADIDLQPLLTSAMAFGDAGMFGDMQIGKWLKSDDNALVEDSIVNIIEGKVKQAMSLKLQNVESGELDLEIEWIPLEQ* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1102 333 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 10 333 IPR044518 GO:0005096|GO:0005543
Dod03g1102 333 CDD ArfGap 20 126 - -
Dod03g1102 333 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Dod03g1102 333 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Dod03g1102 333 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Dod03g1102 333 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 175 330 IPR035892 -
Dod03g1102 333 ProSiteProfiles C2 domain profile. 162 274 IPR000008 -
Dod03g1102 333 SUPERFAMILY ArfGap/RecO-like zinc finger 17 134 IPR037278 -
Dod03g1102 333 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 10 333 - -
Dod03g1102 333 Gene3D C2 domain 175 333 IPR035892 -
Dod03g1102 333 Pfam C2 domain 178 268 IPR000008 -
Dod03g1102 333 CDD C2_ArfGAP 176 320 - -
Dod03g1102 333 SMART C2_3c 178 273 IPR000008 -
Dod03g1102 333 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 131 IPR001164 GO:0005096
Dod03g1102 333 SMART arf_gap_3 18 139 IPR001164 GO:0005096
Dod03g1102 333 Gene3D Arf GTPase activating protein 3 137 IPR038508 -
Dod03g1102 333 Pfam Putative GTPase activating protein for Arf 18 133 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1102 Dod-Chr3 13654498 13661453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1102 3 333 C2H2 Transcription Factor Family AT4G21160 73.294 0.0 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1102 K12486 - gmx:100810806 557.755