Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1099 ATGATAGACGTGATTCTGGAGAAAGAAAAACAGTTGGAATCACTACCAGCGGTTGTGGTGGTGCCGTTGGTGGACGCCGCCAGCAAAGGGAACAGATTGAAAGTTGATGAGAGGAAACACAGCGATTCTGACAAGAAGGAGATTGTGAAAATTTGTGTGCTGTTGTCGAAGAAGGAGATTGAGGAGGATTTGATGAAGATGGTGGGTCGTCGGTCATGGCAAAGGCCAAAAAGCAAGCCCAAAACTTTGAGGATGAAATTGGACGAGACACAACAGCAGTTCGATTCAGTTCCAGGAAGCTCCCACAAATTGACAAATTTGCCCTTCCCTCAAGGTTTGGACAAGGTGTTGCATGTGAAAAAGGAAAACATGACTTCTACCCATGACGTTACAGATAATGAAGCTGGTGGGCAGCAGCAGACAGAATCAAAGATGCAGTCTTTATCTGAAAATGGAATTTCTCAGCCAAGTACTGGTATGCAGAATGTTCAGTATGCAACACCTCCACCACTTGGAACTGGGCCTGCCATGGCACCACCTGCTTACCCATATCCAGATCCATACTACAGAAGCATCTTTGCTCCATATGATGCACAACCTTATCCCTCACAACCATATGGTGGACAGCCAATGGTCAACCTTCAGTTAATGGGAATTCAACAAGCTGGTGTTCCTTTGCCAACTGATGCAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAGTATCATGGTATATTAAGGCGTAGACAGTCCCGTGCTAAAGCTGAATCAGAACATAAAGCTATGAGAAACCGTAAGCCATACCTGCATGAATCTCGACATTTGCATGCACTGAGGAGAGCAAGAGGATGTGGAGGCCGGTTTCTGAATTCAAAGAAAAATGAGAATCAGCAGAATGTGGAGCCTTCTTCTGACAACTCACAGTCTAGTGACAATCTCAATCCTGATAAAAATGATATTGCGCCATCGGATAGGACATCCTAA 984 0.4492 MIDVILEKEKQLESLPAVVVVPLVDAASKGNRLKVDERKHSDSDKKEIVKICVLLSKKEIEEDLMKMVGRRSWQRPKSKPKTLRMKLDETQQQFDSVPGSSHKLTNLPFPQGLDKVLHVKKENMTSTHDVTDNEAGGQQQTESKMQSLSENGISQPSTGMQNVQYATPPPLGTGPAMAPPAYPYPDPYYRSIFAPYDAQPYPSQPYGGQPMVNLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESEHKAMRNRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQNVEPSSDNSQSSDNLNPDKNDIAPSDRTS* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1099 327 ProSiteProfiles NF-YA/HAP2 family profile. 231 291 IPR001289 GO:0003700|GO:0006355
Dod03g1099 327 MobiDBLite consensus disorder prediction 249 265 - -
Dod03g1099 327 Gene3D - 231 292 - -
Dod03g1099 327 MobiDBLite consensus disorder prediction 129 151 - -
Dod03g1099 327 MobiDBLite consensus disorder prediction 290 321 - -
Dod03g1099 327 Pfam Protein of unknown function (DUF1639) 55 89 IPR012438 -
Dod03g1099 327 MobiDBLite consensus disorder prediction 285 327 - -
Dod03g1099 327 MobiDBLite consensus disorder prediction 248 267 - -
Dod03g1099 327 MobiDBLite consensus disorder prediction 127 151 - -
Dod03g1099 327 SMART cbf3 230 291 IPR001289 GO:0003700|GO:0006355
Dod03g1099 327 PRINTS CCAAT-binding transcription factor subunit B signature 234 256 IPR001289 GO:0003700|GO:0006355
Dod03g1099 327 PRINTS CCAAT-binding transcription factor subunit B signature 265 288 IPR001289 GO:0003700|GO:0006355
Dod03g1099 327 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 124 306 IPR001289 GO:0003700|GO:0006355
Dod03g1099 327 ProSitePatterns NF-YA/HAP2 subunit signature. 236 256 IPR018362 GO:0003677|GO:0016602
Dod03g1099 327 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 233 288 IPR001289 GO:0003700|GO:0006355
Dod03g1099 327 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 124 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1099 Dod-Chr3 13632531 13639250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1099 125 327 CCAAT-HAP2 Transcription Factor Family AT1G30500 55.122 6.40e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Dod03g1099 CBFB_NFYA 1.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1099 K08064 - gmx:100809036 323.168